Hb_000071_060

Information

Type -
Description -
Location Contig71: 48738-49274
Sequence    

Annotation

kegg
ID rcu:RCOM_0449900
description hypothetical protein
nr
ID XP_002533586.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LZ60
description Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana GN=SMR3 PE=2 SV=1
trembl
ID B9T5R7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0449900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000071_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000243_230 0.1039120992 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_008686_040 0.1059743053 - - PREDICTED: uncharacterized protein LOC105632278 isoform X3 [Jatropha curcas]
4 Hb_000331_170 0.1092897989 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
5 Hb_000073_040 0.1180195566 - - hypothetical protein POPTR_0003s21020g, partial [Populus trichocarpa]
6 Hb_000375_220 0.118084509 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
7 Hb_000072_230 0.1181975453 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
8 Hb_007044_240 0.1189146427 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
9 Hb_004453_160 0.119673214 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000031_240 0.1218084458 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
11 Hb_000847_090 0.1220130053 - - PREDICTED: uncharacterized protein LOC105644263 isoform X1 [Jatropha curcas]
12 Hb_001140_190 0.1221868479 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
13 Hb_019516_010 0.1233588308 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
14 Hb_004007_050 0.1251817051 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT [Jatropha curcas]
15 Hb_001958_040 0.1257845345 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
16 Hb_002045_160 0.1271546153 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
17 Hb_132840_190 0.1284944221 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
18 Hb_004143_090 0.1291627613 - - PREDICTED: VIN3-like protein 2 isoform X1 [Jatropha curcas]
19 Hb_000397_060 0.1297478891 - - PREDICTED: uncharacterized protein LOC105641237 [Jatropha curcas]
20 Hb_006614_020 0.1306898114 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]

Gene co-expression network

sample Hb_000071_060 Hb_000071_060 Hb_000243_230 Hb_000243_230 Hb_000071_060--Hb_000243_230 Hb_008686_040 Hb_008686_040 Hb_000071_060--Hb_008686_040 Hb_000331_170 Hb_000331_170 Hb_000071_060--Hb_000331_170 Hb_000073_040 Hb_000073_040 Hb_000071_060--Hb_000073_040 Hb_000375_220 Hb_000375_220 Hb_000071_060--Hb_000375_220 Hb_000072_230 Hb_000072_230 Hb_000071_060--Hb_000072_230 Hb_000243_230--Hb_008686_040 Hb_001140_190 Hb_001140_190 Hb_000243_230--Hb_001140_190 Hb_001662_120 Hb_001662_120 Hb_000243_230--Hb_001662_120 Hb_000243_230--Hb_000072_230 Hb_000438_160 Hb_000438_160 Hb_000243_230--Hb_000438_160 Hb_000258_400 Hb_000258_400 Hb_008686_040--Hb_000258_400 Hb_072952_010 Hb_072952_010 Hb_008686_040--Hb_072952_010 Hb_072620_010 Hb_072620_010 Hb_008686_040--Hb_072620_010 Hb_007760_060 Hb_007760_060 Hb_008686_040--Hb_007760_060 Hb_008686_040--Hb_000073_040 Hb_000375_100 Hb_000375_100 Hb_008686_040--Hb_000375_100 Hb_000031_240 Hb_000031_240 Hb_000331_170--Hb_000031_240 Hb_031321_020 Hb_031321_020 Hb_000331_170--Hb_031321_020 Hb_007221_020 Hb_007221_020 Hb_000331_170--Hb_007221_020 Hb_005276_140 Hb_005276_140 Hb_000331_170--Hb_005276_140 Hb_019516_010 Hb_019516_010 Hb_000331_170--Hb_019516_010 Hb_004453_160 Hb_004453_160 Hb_000331_170--Hb_004453_160 Hb_001958_040 Hb_001958_040 Hb_000073_040--Hb_001958_040 Hb_000397_060 Hb_000397_060 Hb_000073_040--Hb_000397_060 Hb_000073_040--Hb_000258_400 Hb_000073_040--Hb_072952_010 Hb_000073_040--Hb_072620_010 Hb_002045_160 Hb_002045_160 Hb_000073_040--Hb_002045_160 Hb_002030_010 Hb_002030_010 Hb_000375_220--Hb_002030_010 Hb_000127_240 Hb_000127_240 Hb_000375_220--Hb_000127_240 Hb_006614_020 Hb_006614_020 Hb_000375_220--Hb_006614_020 Hb_000847_090 Hb_000847_090 Hb_000375_220--Hb_000847_090 Hb_003006_070 Hb_003006_070 Hb_000375_220--Hb_003006_070 Hb_009847_010 Hb_009847_010 Hb_000375_220--Hb_009847_010 Hb_000107_360 Hb_000107_360 Hb_000072_230--Hb_000107_360 Hb_000072_230--Hb_000331_170 Hb_000417_090 Hb_000417_090 Hb_000072_230--Hb_000417_090 Hb_000072_230--Hb_000031_240 Hb_011310_170 Hb_011310_170 Hb_000072_230--Hb_011310_170 Hb_000964_050 Hb_000964_050 Hb_000072_230--Hb_000964_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0512898 0.087557 10.5592 6.98244 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.119656 0 0.32296 0.116543 3.21124

CAGE analysis