Hb_001662_120

Information

Type -
Description -
Location Contig1662: 132733-134405
Sequence    

Annotation

kegg
ID rcu:RCOM_0783250
description ammonium transporter, putative
nr
ID XP_012065329.1
description PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
swissprot
ID Q84KJ6
description Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1
trembl
ID B9SXC7
description Ammonium transporter OS=Ricinus communis GN=RCOM_0783250 PE=3 SV=1
Gene Ontology
ID GO:0016021
description ammonium transporter 3 member 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15334: 133656-134072
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001662_120 0.0 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
2 Hb_002249_010 0.1122179638 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_118282_020 0.144221556 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
4 Hb_001755_040 0.1461692567 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
5 Hb_014497_070 0.1467013056 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
6 Hb_000243_230 0.1500739824 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002818_060 0.1504106063 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000567_290 0.1540190897 - - hypothetical protein RCOM_0303940 [Ricinus communis]
9 Hb_000020_040 0.1549819562 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
10 Hb_000936_030 0.1558715001 - - hypothetical protein RCOM_0615680 [Ricinus communis]
11 Hb_004774_080 0.1563429555 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003085_070 0.1583319657 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
13 Hb_000418_040 0.1588994692 - - hypothetical protein RCOM_0377590 [Ricinus communis]
14 Hb_004619_090 0.1594825671 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010705_040 0.1596205611 - - PREDICTED: kinesin-4 [Jatropha curcas]
16 Hb_003813_110 0.1641935258 - - conserved hypothetical protein [Ricinus communis]
17 Hb_016898_020 0.1648853423 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
18 Hb_101133_050 0.1651281264 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
19 Hb_000069_510 0.1673287011 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
20 Hb_000107_360 0.1691324305 - - PREDICTED: xylem cysteine proteinase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001662_120 Hb_001662_120 Hb_002249_010 Hb_002249_010 Hb_001662_120--Hb_002249_010 Hb_118282_020 Hb_118282_020 Hb_001662_120--Hb_118282_020 Hb_001755_040 Hb_001755_040 Hb_001662_120--Hb_001755_040 Hb_014497_070 Hb_014497_070 Hb_001662_120--Hb_014497_070 Hb_000243_230 Hb_000243_230 Hb_001662_120--Hb_000243_230 Hb_002818_060 Hb_002818_060 Hb_001662_120--Hb_002818_060 Hb_000567_290 Hb_000567_290 Hb_002249_010--Hb_000567_290 Hb_004619_090 Hb_004619_090 Hb_002249_010--Hb_004619_090 Hb_003813_110 Hb_003813_110 Hb_002249_010--Hb_003813_110 Hb_000418_040 Hb_000418_040 Hb_002249_010--Hb_000418_040 Hb_002249_010--Hb_118282_020 Hb_004774_080 Hb_004774_080 Hb_118282_020--Hb_004774_080 Hb_000527_020 Hb_000527_020 Hb_118282_020--Hb_000527_020 Hb_005398_050 Hb_005398_050 Hb_118282_020--Hb_005398_050 Hb_118282_020--Hb_000418_040 Hb_007474_020 Hb_007474_020 Hb_118282_020--Hb_007474_020 Hb_001307_150 Hb_001307_150 Hb_118282_020--Hb_001307_150 Hb_002232_310 Hb_002232_310 Hb_001755_040--Hb_002232_310 Hb_004109_100 Hb_004109_100 Hb_001755_040--Hb_004109_100 Hb_000936_030 Hb_000936_030 Hb_001755_040--Hb_000936_030 Hb_007574_020 Hb_007574_020 Hb_001755_040--Hb_007574_020 Hb_003935_090 Hb_003935_090 Hb_001755_040--Hb_003935_090 Hb_010705_040 Hb_010705_040 Hb_001755_040--Hb_010705_040 Hb_014497_070--Hb_010705_040 Hb_011360_130 Hb_011360_130 Hb_014497_070--Hb_011360_130 Hb_014497_070--Hb_001755_040 Hb_002205_180 Hb_002205_180 Hb_014497_070--Hb_002205_180 Hb_014497_070--Hb_002232_310 Hb_000441_210 Hb_000441_210 Hb_014497_070--Hb_000441_210 Hb_000071_060 Hb_000071_060 Hb_000243_230--Hb_000071_060 Hb_008686_040 Hb_008686_040 Hb_000243_230--Hb_008686_040 Hb_001140_190 Hb_001140_190 Hb_000243_230--Hb_001140_190 Hb_000072_230 Hb_000072_230 Hb_000243_230--Hb_000072_230 Hb_000438_160 Hb_000438_160 Hb_000243_230--Hb_000438_160 Hb_001349_050 Hb_001349_050 Hb_002818_060--Hb_001349_050 Hb_001623_250 Hb_001623_250 Hb_002818_060--Hb_001623_250 Hb_002203_010 Hb_002203_010 Hb_002818_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_002818_060--Hb_000359_100 Hb_002894_060 Hb_002894_060 Hb_002818_060--Hb_002894_060 Hb_000363_390 Hb_000363_390 Hb_002818_060--Hb_000363_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0547901 0.0731251 2.77467 1.77771 0.0274989 0.0148687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0334635 0.0263257 0.0986863 0.0105172 0.27466

CAGE analysis