Hb_000567_290

Information

Type -
Description -
Location Contig567: 345193-347580
Sequence    

Annotation

kegg
ID rcu:RCOM_0303940
description hypothetical protein
nr
ID XP_002530557.1
description hypothetical protein RCOM_0303940 [Ricinus communis]
swissprot
ID Q5XVH5
description Uncharacterized protein At1g65710 OS=Arabidopsis thaliana GN=At1g65710 PE=2 SV=1
trembl
ID B9SX38
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0303940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49150: 345190-347893
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_290 0.0 - - hypothetical protein RCOM_0303940 [Ricinus communis]
2 Hb_002311_090 0.0944032716 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
3 Hb_003813_110 0.0959977692 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001410_030 0.1042594024 - - hypothetical protein JCGZ_20419 [Jatropha curcas]
5 Hb_000418_040 0.1185139778 - - hypothetical protein RCOM_0377590 [Ricinus communis]
6 Hb_101133_050 0.1192662852 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
7 Hb_000661_150 0.1193174477 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
8 Hb_012150_040 0.1330001349 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007632_210 0.1374821132 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
10 Hb_004619_090 0.1375863056 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003055_090 0.1431048046 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
12 Hb_059226_010 0.1441971234 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
13 Hb_000190_220 0.1449479634 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
14 Hb_001584_360 0.1454315432 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
15 Hb_001565_090 0.1489533343 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
16 Hb_001699_270 0.1489760084 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
17 Hb_003228_050 0.1496133573 - - chromomethylase [Hevea brasiliensis]
18 Hb_014497_070 0.1497904212 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
19 Hb_004129_060 0.1502554505 - - triacylglycerol lipase, putative [Ricinus communis]
20 Hb_006693_010 0.1513266567 - - PREDICTED: uncharacterized protein LOC105628875 [Jatropha curcas]

Gene co-expression network

sample Hb_000567_290 Hb_000567_290 Hb_002311_090 Hb_002311_090 Hb_000567_290--Hb_002311_090 Hb_003813_110 Hb_003813_110 Hb_000567_290--Hb_003813_110 Hb_001410_030 Hb_001410_030 Hb_000567_290--Hb_001410_030 Hb_000418_040 Hb_000418_040 Hb_000567_290--Hb_000418_040 Hb_101133_050 Hb_101133_050 Hb_000567_290--Hb_101133_050 Hb_000661_150 Hb_000661_150 Hb_000567_290--Hb_000661_150 Hb_002311_090--Hb_101133_050 Hb_007632_210 Hb_007632_210 Hb_002311_090--Hb_007632_210 Hb_012150_040 Hb_012150_040 Hb_002311_090--Hb_012150_040 Hb_124677_050 Hb_124677_050 Hb_002311_090--Hb_124677_050 Hb_002311_090--Hb_000661_150 Hb_003813_110--Hb_000661_150 Hb_004619_090 Hb_004619_090 Hb_003813_110--Hb_004619_090 Hb_000441_210 Hb_000441_210 Hb_003813_110--Hb_000441_210 Hb_003813_110--Hb_002311_090 Hb_003813_110--Hb_000418_040 Hb_001410_030--Hb_002311_090 Hb_001410_030--Hb_000418_040 Hb_000390_010 Hb_000390_010 Hb_001410_030--Hb_000390_010 Hb_001410_030--Hb_003813_110 Hb_001950_090 Hb_001950_090 Hb_001410_030--Hb_001950_090 Hb_118282_020 Hb_118282_020 Hb_000418_040--Hb_118282_020 Hb_000418_040--Hb_000661_150 Hb_000418_040--Hb_004619_090 Hb_059226_010 Hb_059226_010 Hb_000418_040--Hb_059226_010 Hb_001565_090 Hb_001565_090 Hb_000418_040--Hb_001565_090 Hb_007474_020 Hb_007474_020 Hb_000418_040--Hb_007474_020 Hb_001307_150 Hb_001307_150 Hb_101133_050--Hb_001307_150 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_000317_120 Hb_000317_120 Hb_101133_050--Hb_000317_120 Hb_005276_090 Hb_005276_090 Hb_101133_050--Hb_005276_090 Hb_001699_270 Hb_001699_270 Hb_000661_150--Hb_001699_270 Hb_000661_150--Hb_101133_050 Hb_000661_150--Hb_001950_090 Hb_001688_100 Hb_001688_100 Hb_000661_150--Hb_001688_100 Hb_000661_150--Hb_001307_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.337754 0.407343 11.686 8.90512 0.0251504 0.123144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.655978 0.265902 0.267723 0.895168 0.961661

CAGE analysis