Hb_001410_030

Information

Type -
Description -
Location Contig1410: 48646-55655
Sequence    

Annotation

kegg
ID rcu:RCOM_1312210
description hypothetical protein
nr
ID KDP25263.1
description hypothetical protein JCGZ_20419 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JR43
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20419 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11104: 54689-55625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_030 0.0 - - hypothetical protein JCGZ_20419 [Jatropha curcas]
2 Hb_000567_290 0.1042594024 - - hypothetical protein RCOM_0303940 [Ricinus communis]
3 Hb_002311_090 0.1304063073 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
4 Hb_000418_040 0.1433421156 - - hypothetical protein RCOM_0377590 [Ricinus communis]
5 Hb_000390_010 0.1458690938 - - PREDICTED: protein CDI [Jatropha curcas]
6 Hb_003813_110 0.1494139722 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001950_090 0.1499041266 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
8 Hb_000345_450 0.1510651098 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
9 Hb_000661_150 0.154164618 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
10 Hb_059226_010 0.1542413451 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
11 Hb_000069_650 0.154825675 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006198_100 0.1568722055 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
13 Hb_101133_050 0.1579916943 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
14 Hb_003228_050 0.1585677687 - - chromomethylase [Hevea brasiliensis]
15 Hb_001699_270 0.1601550383 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
16 Hb_000172_090 0.1617300108 - - PREDICTED: uncharacterized protein LOC105650755 [Jatropha curcas]
17 Hb_007632_210 0.1620090973 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
18 Hb_001390_040 0.165067733 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
19 Hb_000701_020 0.166059358 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
20 Hb_001348_100 0.1670896181 - - PREDICTED: uncharacterized protein LOC105638934 [Jatropha curcas]

Gene co-expression network

sample Hb_001410_030 Hb_001410_030 Hb_000567_290 Hb_000567_290 Hb_001410_030--Hb_000567_290 Hb_002311_090 Hb_002311_090 Hb_001410_030--Hb_002311_090 Hb_000418_040 Hb_000418_040 Hb_001410_030--Hb_000418_040 Hb_000390_010 Hb_000390_010 Hb_001410_030--Hb_000390_010 Hb_003813_110 Hb_003813_110 Hb_001410_030--Hb_003813_110 Hb_001950_090 Hb_001950_090 Hb_001410_030--Hb_001950_090 Hb_000567_290--Hb_002311_090 Hb_000567_290--Hb_003813_110 Hb_000567_290--Hb_000418_040 Hb_101133_050 Hb_101133_050 Hb_000567_290--Hb_101133_050 Hb_000661_150 Hb_000661_150 Hb_000567_290--Hb_000661_150 Hb_002311_090--Hb_101133_050 Hb_007632_210 Hb_007632_210 Hb_002311_090--Hb_007632_210 Hb_012150_040 Hb_012150_040 Hb_002311_090--Hb_012150_040 Hb_124677_050 Hb_124677_050 Hb_002311_090--Hb_124677_050 Hb_002311_090--Hb_000661_150 Hb_118282_020 Hb_118282_020 Hb_000418_040--Hb_118282_020 Hb_000418_040--Hb_000661_150 Hb_004619_090 Hb_004619_090 Hb_000418_040--Hb_004619_090 Hb_059226_010 Hb_059226_010 Hb_000418_040--Hb_059226_010 Hb_001565_090 Hb_001565_090 Hb_000418_040--Hb_001565_090 Hb_007474_020 Hb_007474_020 Hb_000418_040--Hb_007474_020 Hb_012092_040 Hb_012092_040 Hb_000390_010--Hb_012092_040 Hb_003464_010 Hb_003464_010 Hb_000390_010--Hb_003464_010 Hb_089140_070 Hb_089140_070 Hb_000390_010--Hb_089140_070 Hb_000035_230 Hb_000035_230 Hb_000390_010--Hb_000035_230 Hb_001971_040 Hb_001971_040 Hb_000390_010--Hb_001971_040 Hb_000390_010--Hb_001950_090 Hb_003813_110--Hb_000661_150 Hb_003813_110--Hb_004619_090 Hb_000441_210 Hb_000441_210 Hb_003813_110--Hb_000441_210 Hb_003813_110--Hb_002311_090 Hb_003813_110--Hb_000418_040 Hb_003847_060 Hb_003847_060 Hb_001950_090--Hb_003847_060 Hb_001699_270 Hb_001699_270 Hb_001950_090--Hb_001699_270 Hb_000345_450 Hb_000345_450 Hb_001950_090--Hb_000345_450 Hb_000317_120 Hb_000317_120 Hb_001950_090--Hb_000317_120 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650 Hb_006588_100 Hb_006588_100 Hb_001950_090--Hb_006588_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0163405 0.0239604 0.744125 0.639795 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0598842 0.0235567 0 0.0751862 0.0493558

CAGE analysis