Hb_007632_210

Information

Type -
Description -
Location Contig7632: 175225-175935
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37630g
description hypothetical protein
nr
ID XP_011038908.1
description PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5GW35
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s37630g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57367: 175082-175942
cDNA
(Sanger)
(ID:Location)		 018_D22r.ab1: 175082-175776

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007632_210 0.0 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
2 Hb_005183_150 0.0777220056 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
3 Hb_124677_050 0.0960958148 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000661_150 0.1034335689 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
5 Hb_002311_090 0.1034401261 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
6 Hb_003228_050 0.1060153074 - - chromomethylase [Hevea brasiliensis]
7 Hb_101133_050 0.1079083468 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
8 Hb_020301_020 0.1080360247 - - calmodulin binding protein, putative [Ricinus communis]
9 Hb_003360_010 0.1162479251 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
10 Hb_000500_340 0.1175219202 - - PREDICTED: exonuclease 1 [Jatropha curcas]
11 Hb_001524_120 0.1180320372 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
12 Hb_033041_010 0.1230737727 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
13 Hb_001584_360 0.1255088128 - - PREDICTED: serine/threonine-protein kinase haspin homolog hrk1 [Jatropha curcas]
14 Hb_001688_100 0.1256285819 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
15 Hb_000418_040 0.1277971411 - - hypothetical protein RCOM_0377590 [Ricinus communis]
16 Hb_000317_120 0.1308180673 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
17 Hb_000431_100 0.1311999299 - - ribonucleoside-diphosphate reductase small chain, putative [Ricinus communis]
18 Hb_005542_150 0.1330841668 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
19 Hb_002030_130 0.1357224243 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
20 Hb_001699_270 0.1360938158 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]

Gene co-expression network

sample Hb_007632_210 Hb_007632_210 Hb_005183_150 Hb_005183_150 Hb_007632_210--Hb_005183_150 Hb_124677_050 Hb_124677_050 Hb_007632_210--Hb_124677_050 Hb_000661_150 Hb_000661_150 Hb_007632_210--Hb_000661_150 Hb_002311_090 Hb_002311_090 Hb_007632_210--Hb_002311_090 Hb_003228_050 Hb_003228_050 Hb_007632_210--Hb_003228_050 Hb_101133_050 Hb_101133_050 Hb_007632_210--Hb_101133_050 Hb_033041_010 Hb_033041_010 Hb_005183_150--Hb_033041_010 Hb_003360_010 Hb_003360_010 Hb_005183_150--Hb_003360_010 Hb_001524_120 Hb_001524_120 Hb_005183_150--Hb_001524_120 Hb_007632_080 Hb_007632_080 Hb_005183_150--Hb_007632_080 Hb_005183_150--Hb_124677_050 Hb_124677_050--Hb_003360_010 Hb_002284_260 Hb_002284_260 Hb_124677_050--Hb_002284_260 Hb_124677_050--Hb_002311_090 Hb_124677_050--Hb_003228_050 Hb_001699_270 Hb_001699_270 Hb_000661_150--Hb_001699_270 Hb_000661_150--Hb_101133_050 Hb_001950_090 Hb_001950_090 Hb_000661_150--Hb_001950_090 Hb_001688_100 Hb_001688_100 Hb_000661_150--Hb_001688_100 Hb_000418_040 Hb_000418_040 Hb_000661_150--Hb_000418_040 Hb_001307_150 Hb_001307_150 Hb_000661_150--Hb_001307_150 Hb_002311_090--Hb_101133_050 Hb_000567_290 Hb_000567_290 Hb_002311_090--Hb_000567_290 Hb_012150_040 Hb_012150_040 Hb_002311_090--Hb_012150_040 Hb_002311_090--Hb_000661_150 Hb_002030_130 Hb_002030_130 Hb_003228_050--Hb_002030_130 Hb_003228_050--Hb_001524_120 Hb_003228_050--Hb_101133_050 Hb_000956_050 Hb_000956_050 Hb_003228_050--Hb_000956_050 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_000317_120 Hb_000317_120 Hb_101133_050--Hb_000317_120 Hb_005276_090 Hb_005276_090 Hb_101133_050--Hb_005276_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.24905 3.84984 72.974 48.6337 0 0.163882
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66264 1.92953 2.44767 13.97 5.92018

CAGE analysis