Hb_000956_050

Information

Type transcription factor
Description TF Family: bHLH
Location Contig956: 50310-52677
Sequence    

Annotation

kegg
ID rcu:RCOM_1589670
description hypothetical protein
nr
ID XP_012068320.1
description PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FUA4
description Transcription factor SPATULA OS=Arabidopsis thaliana GN=SPT PE=1 SV=1
trembl
ID A0A067KZV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16113 PE=4 SV=1
Gene Ontology
ID GO:0016772
description transcription factor spatula-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000956_050 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
2 Hb_000190_220 0.1024621125 - - PREDICTED: serine/threonine-protein kinase Nek2 [Jatropha curcas]
3 Hb_003228_050 0.1130658288 - - chromomethylase [Hevea brasiliensis]
4 Hb_003813_090 0.116719009 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
5 Hb_024714_090 0.120959214 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
6 Hb_000907_140 0.1227391592 - - PREDICTED: annexin D5-like [Jatropha curcas]
7 Hb_002311_090 0.1265882855 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
8 Hb_000027_160 0.1285963602 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
9 Hb_007101_040 0.1399659808 - - PREDICTED: MLP-like protein 423 [Populus euphratica]
10 Hb_001862_050 0.141349405 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
11 Hb_000964_050 0.1425369476 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
12 Hb_001307_020 0.1428102818 - - electron carrier, putative [Ricinus communis]
13 Hb_007632_210 0.1430149342 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
14 Hb_101133_050 0.1438738696 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
15 Hb_000500_340 0.1439182826 - - PREDICTED: exonuclease 1 [Jatropha curcas]
16 Hb_003020_190 0.1444330382 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
17 Hb_007474_020 0.1446829352 - - multicopper oxidase, putative [Ricinus communis]
18 Hb_003109_010 0.1453349891 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
19 Hb_000991_030 0.1456956453 - - PREDICTED: uncharacterized protein LOC105122436 [Populus euphratica]
20 Hb_004129_060 0.1458149987 - - triacylglycerol lipase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000956_050 Hb_000956_050 Hb_000190_220 Hb_000190_220 Hb_000956_050--Hb_000190_220 Hb_003228_050 Hb_003228_050 Hb_000956_050--Hb_003228_050 Hb_003813_090 Hb_003813_090 Hb_000956_050--Hb_003813_090 Hb_024714_090 Hb_024714_090 Hb_000956_050--Hb_024714_090 Hb_000907_140 Hb_000907_140 Hb_000956_050--Hb_000907_140 Hb_002311_090 Hb_002311_090 Hb_000956_050--Hb_002311_090 Hb_000139_280 Hb_000139_280 Hb_000190_220--Hb_000139_280 Hb_000190_220--Hb_002311_090 Hb_010436_080 Hb_010436_080 Hb_000190_220--Hb_010436_080 Hb_007943_180 Hb_007943_180 Hb_000190_220--Hb_007943_180 Hb_006970_130 Hb_006970_130 Hb_000190_220--Hb_006970_130 Hb_002030_130 Hb_002030_130 Hb_003228_050--Hb_002030_130 Hb_001524_120 Hb_001524_120 Hb_003228_050--Hb_001524_120 Hb_007632_210 Hb_007632_210 Hb_003228_050--Hb_007632_210 Hb_124677_050 Hb_124677_050 Hb_003228_050--Hb_124677_050 Hb_101133_050 Hb_101133_050 Hb_003228_050--Hb_101133_050 Hb_003813_090--Hb_001524_120 Hb_000576_140 Hb_000576_140 Hb_003813_090--Hb_000576_140 Hb_006693_010 Hb_006693_010 Hb_003813_090--Hb_006693_010 Hb_003813_090--Hb_003228_050 Hb_005675_050 Hb_005675_050 Hb_003813_090--Hb_005675_050 Hb_001085_160 Hb_001085_160 Hb_024714_090--Hb_001085_160 Hb_000027_160 Hb_000027_160 Hb_024714_090--Hb_000027_160 Hb_000213_020 Hb_000213_020 Hb_024714_090--Hb_000213_020 Hb_001571_080 Hb_001571_080 Hb_024714_090--Hb_001571_080 Hb_001633_160 Hb_001633_160 Hb_024714_090--Hb_001633_160 Hb_002203_010 Hb_002203_010 Hb_024714_090--Hb_002203_010 Hb_007101_040 Hb_007101_040 Hb_000907_140--Hb_007101_040 Hb_000907_140--Hb_000027_160 Hb_001934_040 Hb_001934_040 Hb_000907_140--Hb_001934_040 Hb_000907_140--Hb_007943_180 Hb_000914_140 Hb_000914_140 Hb_000907_140--Hb_000914_140 Hb_002311_090--Hb_101133_050 Hb_000567_290 Hb_000567_290 Hb_002311_090--Hb_000567_290 Hb_002311_090--Hb_007632_210 Hb_012150_040 Hb_012150_040 Hb_002311_090--Hb_012150_040 Hb_002311_090--Hb_124677_050 Hb_000661_150 Hb_000661_150 Hb_002311_090--Hb_000661_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0294661 0.385263 3.48829 2.09028 0.0236232 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.10794 0.16978 0.077858 0.324723 0.605555

CAGE analysis