Hb_007101_040

Information

Type -
Description -
Location Contig7101: 16765-27668
Sequence    

Annotation

kegg
ID rcu:RCOM_0393500
description Major latex protein, putative
nr
ID XP_011021651.1
description PREDICTED: MLP-like protein 423 [Populus euphratica]
swissprot
ID Q93VR4
description MLP-like protein 423 OS=Arabidopsis thaliana GN=MLP423 PE=2 SV=1
trembl
ID A0A067JBV9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21787 PE=4 SV=1
Gene Ontology
ID GO:0009507
description mlp-like protein 423

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55236: 18784-27592 , PASA_asmbl_55237: 18856-19531
cDNA
(Sanger)
(ID:Location)		 024_G02.ab1: 18856-19530

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_040 0.0 - - PREDICTED: MLP-like protein 423 [Populus euphratica]
2 Hb_000907_140 0.1162620845 - - PREDICTED: annexin D5-like [Jatropha curcas]
3 Hb_003573_050 0.1292521947 - - ARF GTPase activator, putative [Ricinus communis]
4 Hb_001437_260 0.1319214795 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
5 Hb_004007_130 0.1378659272 - - PREDICTED: uncharacterized protein LOC105639843 [Jatropha curcas]
6 Hb_000914_140 0.1397446738 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
7 Hb_000956_050 0.1399659808 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
8 Hb_004832_010 0.140870884 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000735_060 0.1412038109 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
10 Hb_000731_280 0.1439161992 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
11 Hb_000418_170 0.1443551584 - - PREDICTED: ABC transporter C family member 12-like isoform X4 [Populus euphratica]
12 Hb_000207_350 0.1451888725 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
13 Hb_001123_310 0.1452023587 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
14 Hb_000739_170 0.1462677022 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
15 Hb_001377_120 0.1486014411 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
16 Hb_001524_120 0.1499967508 - - myo-inositol-1 phosphate synthase [Hevea brasiliensis]
17 Hb_002871_130 0.1501575844 - - PREDICTED: non-structural maintenance of chromosomes element 4 homolog A isoform X2 [Jatropha curcas]
18 Hb_004531_080 0.1502191954 - - hypothetical protein RCOM_1491960 [Ricinus communis]
19 Hb_002817_030 0.1557140322 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
20 Hb_000027_160 0.1558052979 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_007101_040 Hb_007101_040 Hb_000907_140 Hb_000907_140 Hb_007101_040--Hb_000907_140 Hb_003573_050 Hb_003573_050 Hb_007101_040--Hb_003573_050 Hb_001437_260 Hb_001437_260 Hb_007101_040--Hb_001437_260 Hb_004007_130 Hb_004007_130 Hb_007101_040--Hb_004007_130 Hb_000914_140 Hb_000914_140 Hb_007101_040--Hb_000914_140 Hb_000956_050 Hb_000956_050 Hb_007101_040--Hb_000956_050 Hb_000027_160 Hb_000027_160 Hb_000907_140--Hb_000027_160 Hb_000907_140--Hb_000956_050 Hb_001934_040 Hb_001934_040 Hb_000907_140--Hb_001934_040 Hb_007943_180 Hb_007943_180 Hb_000907_140--Hb_007943_180 Hb_000907_140--Hb_000914_140 Hb_001828_110 Hb_001828_110 Hb_003573_050--Hb_001828_110 Hb_003573_050--Hb_000914_140 Hb_002817_030 Hb_002817_030 Hb_003573_050--Hb_002817_030 Hb_000418_170 Hb_000418_170 Hb_003573_050--Hb_000418_170 Hb_003747_250 Hb_003747_250 Hb_003573_050--Hb_003747_250 Hb_002490_060 Hb_002490_060 Hb_003573_050--Hb_002490_060 Hb_000941_010 Hb_000941_010 Hb_001437_260--Hb_000941_010 Hb_004446_060 Hb_004446_060 Hb_001437_260--Hb_004446_060 Hb_002805_180 Hb_002805_180 Hb_001437_260--Hb_002805_180 Hb_002918_120 Hb_002918_120 Hb_001437_260--Hb_002918_120 Hb_004832_010 Hb_004832_010 Hb_001437_260--Hb_004832_010 Hb_001104_020 Hb_001104_020 Hb_001437_260--Hb_001104_020 Hb_002871_130 Hb_002871_130 Hb_004007_130--Hb_002871_130 Hb_002284_260 Hb_002284_260 Hb_004007_130--Hb_002284_260 Hb_003360_010 Hb_003360_010 Hb_004007_130--Hb_003360_010 Hb_004531_080 Hb_004531_080 Hb_004007_130--Hb_004531_080 Hb_006970_130 Hb_006970_130 Hb_004007_130--Hb_006970_130 Hb_024682_030 Hb_024682_030 Hb_004007_130--Hb_024682_030 Hb_000914_140--Hb_002817_030 Hb_000914_140--Hb_001828_110 Hb_002311_500 Hb_002311_500 Hb_000914_140--Hb_002311_500 Hb_002053_180 Hb_002053_180 Hb_000914_140--Hb_002053_180 Hb_003759_040 Hb_003759_040 Hb_000914_140--Hb_003759_040 Hb_000190_220 Hb_000190_220 Hb_000956_050--Hb_000190_220 Hb_003228_050 Hb_003228_050 Hb_000956_050--Hb_003228_050 Hb_003813_090 Hb_003813_090 Hb_000956_050--Hb_003813_090 Hb_024714_090 Hb_024714_090 Hb_000956_050--Hb_024714_090 Hb_002311_090 Hb_002311_090 Hb_000956_050--Hb_002311_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0341057 0.863356 5.03207 2.73662 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.236142 0.123764 0.110664 1.20753 1.47221

CAGE analysis