Hb_001633_160

Information

Type -
Description -
Location Contig1633: 122506-125518
Sequence    

Annotation

kegg
ID rcu:RCOM_1445480
description short chain alcohol dehydrogenase, putative (EC:1.1.1.53)
nr
ID XP_012067339.1
description PREDICTED: zerumbone synthase-like isoform X2 [Jatropha curcas]
swissprot
ID Q94KL7
description Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1
trembl
ID A0A067LBH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26863 PE=3 SV=1
Gene Ontology
ID GO:0047044
description zerumbone synthase-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14894: 122295-125594 , PASA_asmbl_14895: 122538-125594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001633_160 0.0 - - PREDICTED: zerumbone synthase-like isoform X2 [Jatropha curcas]
2 Hb_024714_090 0.1159162054 rubber biosynthesis Gene Name: SRPP3 PREDICTED: stress-related protein [Jatropha curcas]
3 Hb_001307_020 0.132439395 - - electron carrier, putative [Ricinus communis]
4 Hb_001085_160 0.1385065356 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
5 Hb_000027_160 0.1468334463 - - PREDICTED: probable protein phosphatase 2C 15 isoform X3 [Jatropha curcas]
6 Hb_000256_030 0.1475828117 - - transferase, putative [Ricinus communis]
7 Hb_000175_300 0.1477250639 - - PREDICTED: uncharacterized protein LOC105634858 [Jatropha curcas]
8 Hb_000213_020 0.1498851611 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003248_030 0.1515041043 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
10 Hb_000956_050 0.1527967893 transcription factor TF Family: bHLH PREDICTED: transcription factor SPATULA-like isoform X1 [Jatropha curcas]
11 Hb_000809_130 0.1554684459 - - PREDICTED: peroxidase 10 isoform X3 [Jatropha curcas]
12 Hb_000300_190 0.1566915309 - - PREDICTED: uncharacterized protein LOC105632566 [Jatropha curcas]
13 Hb_000392_170 0.1583262956 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
14 Hb_004316_020 0.1605096674 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1-like [Jatropha curcas]
15 Hb_000656_320 0.164027606 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
16 Hb_001541_190 0.1641286929 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
17 Hb_002200_020 0.164469141 transcription factor TF Family: C2C2-Dof hypothetical protein RCOM_0137680 [Ricinus communis]
18 Hb_003502_040 0.1693252496 - - PREDICTED: pathogen-related protein-like [Jatropha curcas]
19 Hb_047659_010 0.1707119412 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004005_060 0.1710965855 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]

Gene co-expression network

sample Hb_001633_160 Hb_001633_160 Hb_024714_090 Hb_024714_090 Hb_001633_160--Hb_024714_090 Hb_001307_020 Hb_001307_020 Hb_001633_160--Hb_001307_020 Hb_001085_160 Hb_001085_160 Hb_001633_160--Hb_001085_160 Hb_000027_160 Hb_000027_160 Hb_001633_160--Hb_000027_160 Hb_000256_030 Hb_000256_030 Hb_001633_160--Hb_000256_030 Hb_000175_300 Hb_000175_300 Hb_001633_160--Hb_000175_300 Hb_024714_090--Hb_001085_160 Hb_024714_090--Hb_000027_160 Hb_000213_020 Hb_000213_020 Hb_024714_090--Hb_000213_020 Hb_001571_080 Hb_001571_080 Hb_024714_090--Hb_001571_080 Hb_002203_010 Hb_002203_010 Hb_024714_090--Hb_002203_010 Hb_004223_080 Hb_004223_080 Hb_001307_020--Hb_004223_080 Hb_001541_190 Hb_001541_190 Hb_001307_020--Hb_001541_190 Hb_001307_020--Hb_000027_160 Hb_001828_110 Hb_001828_110 Hb_001307_020--Hb_001828_110 Hb_000905_100 Hb_000905_100 Hb_001307_020--Hb_000905_100 Hb_000809_130 Hb_000809_130 Hb_001307_020--Hb_000809_130 Hb_001085_160--Hb_001571_080 Hb_001085_160--Hb_000213_020 Hb_000830_010 Hb_000830_010 Hb_001085_160--Hb_000830_010 Hb_004005_060 Hb_004005_060 Hb_001085_160--Hb_004005_060 Hb_005568_140 Hb_005568_140 Hb_001085_160--Hb_005568_140 Hb_000349_250 Hb_000349_250 Hb_000027_160--Hb_000349_250 Hb_002053_180 Hb_002053_180 Hb_000027_160--Hb_002053_180 Hb_000027_160--Hb_001571_080 Hb_000086_470 Hb_000086_470 Hb_000027_160--Hb_000086_470 Hb_000027_160--Hb_000905_100 Hb_000331_300 Hb_000331_300 Hb_000256_030--Hb_000331_300 Hb_007846_030 Hb_007846_030 Hb_000256_030--Hb_007846_030 Hb_003376_110 Hb_003376_110 Hb_000256_030--Hb_003376_110 Hb_000160_190 Hb_000160_190 Hb_000256_030--Hb_000160_190 Hb_003248_030 Hb_003248_030 Hb_000256_030--Hb_003248_030 Hb_000175_300--Hb_001541_190 Hb_000069_300 Hb_000069_300 Hb_000175_300--Hb_000069_300 Hb_000190_220 Hb_000190_220 Hb_000175_300--Hb_000190_220 Hb_000175_300--Hb_001307_020 Hb_004679_040 Hb_004679_040 Hb_000175_300--Hb_004679_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.24761 13.4811 9.46377 0.0771678 0.0787316
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.30782 0.823003 0 0.469212 1.85872

CAGE analysis