Hb_000331_300

Information

Type -
Description -
Location Contig331: 251555-253850
Sequence    

Annotation

kegg
ID rcu:RCOM_1506900
description malate synthase, putative (EC:2.3.3.9)
nr
ID XP_012079884.1
description PREDICTED: malate synthase, glyoxysomal [Jatropha curcas]
swissprot
ID P17815
description Malate synthase, glyoxysomal OS=Ricinus communis PE=2 SV=1
trembl
ID A0A067KFB5
description Malate synthase OS=Jatropha curcas GN=JCGZ_11331 PE=3 SV=1
Gene Ontology
ID GO:0004474
description malate glyoxysomal

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34784: 251550-252562 , PASA_asmbl_34785: 252563-254400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_300 0.0 - - PREDICTED: malate synthase, glyoxysomal [Jatropha curcas]
2 Hb_000283_090 0.1253706366 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_000069_510 0.1261517564 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
4 Hb_001301_310 0.1290573383 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001288_040 0.1305265287 - - -
6 Hb_003376_110 0.1367832959 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000160_190 0.1488189202 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
8 Hb_000028_250 0.1499784988 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
9 Hb_000424_050 0.1507518245 - - erecta, putative [Ricinus communis]
10 Hb_004241_160 0.1531368865 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
11 Hb_049846_010 0.1531534063 - - hypothetical protein JCGZ_23781 [Jatropha curcas]
12 Hb_011310_170 0.1533179684 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
13 Hb_000256_030 0.1537470399 - - transferase, putative [Ricinus communis]
14 Hb_003207_210 0.1547225175 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
15 Hb_001085_160 0.154858644 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [Jatropha curcas]
16 Hb_023640_020 0.1559839795 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004128_150 0.1586064296 - - hypothetical protein POPTR_0016s08360g [Populus trichocarpa]
18 Hb_000160_110 0.159415514 - - PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
19 Hb_000213_020 0.1608572421 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005357_140 0.1608593222 - - Xyloglucan endotransglucosylase/hydrolase protein A precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000331_300 Hb_000331_300 Hb_000283_090 Hb_000283_090 Hb_000331_300--Hb_000283_090 Hb_000069_510 Hb_000069_510 Hb_000331_300--Hb_000069_510 Hb_001301_310 Hb_001301_310 Hb_000331_300--Hb_001301_310 Hb_001288_040 Hb_001288_040 Hb_000331_300--Hb_001288_040 Hb_003376_110 Hb_003376_110 Hb_000331_300--Hb_003376_110 Hb_000160_190 Hb_000160_190 Hb_000331_300--Hb_000160_190 Hb_005357_140 Hb_005357_140 Hb_000283_090--Hb_005357_140 Hb_000283_090--Hb_001301_310 Hb_000083_280 Hb_000083_280 Hb_000283_090--Hb_000083_280 Hb_004422_030 Hb_004422_030 Hb_000283_090--Hb_004422_030 Hb_000527_030 Hb_000527_030 Hb_000283_090--Hb_000527_030 Hb_004003_020 Hb_004003_020 Hb_000283_090--Hb_004003_020 Hb_001168_030 Hb_001168_030 Hb_000069_510--Hb_001168_030 Hb_010705_040 Hb_010705_040 Hb_000069_510--Hb_010705_040 Hb_007245_030 Hb_007245_030 Hb_000069_510--Hb_007245_030 Hb_004102_090 Hb_004102_090 Hb_000069_510--Hb_004102_090 Hb_000416_080 Hb_000416_080 Hb_000069_510--Hb_000416_080 Hb_005914_100 Hb_005914_100 Hb_000069_510--Hb_005914_100 Hb_001958_040 Hb_001958_040 Hb_001301_310--Hb_001958_040 Hb_000397_060 Hb_000397_060 Hb_001301_310--Hb_000397_060 Hb_004128_150 Hb_004128_150 Hb_001301_310--Hb_004128_150 Hb_002053_100 Hb_002053_100 Hb_001301_310--Hb_002053_100 Hb_000073_040 Hb_000073_040 Hb_001301_310--Hb_000073_040 Hb_001301_310--Hb_005357_140 Hb_011861_130 Hb_011861_130 Hb_001288_040--Hb_011861_130 Hb_001288_040--Hb_003376_110 Hb_007846_030 Hb_007846_030 Hb_001288_040--Hb_007846_030 Hb_001288_040--Hb_004128_150 Hb_023640_020 Hb_023640_020 Hb_001288_040--Hb_023640_020 Hb_005694_170 Hb_005694_170 Hb_003376_110--Hb_005694_170 Hb_003207_210 Hb_003207_210 Hb_003376_110--Hb_003207_210 Hb_003376_110--Hb_007846_030 Hb_164337_010 Hb_164337_010 Hb_003376_110--Hb_164337_010 Hb_003376_110--Hb_000160_190 Hb_000056_290 Hb_000056_290 Hb_003376_110--Hb_000056_290 Hb_000160_190--Hb_023640_020 Hb_049846_010 Hb_049846_010 Hb_000160_190--Hb_049846_010 Hb_005977_080 Hb_005977_080 Hb_000160_190--Hb_005977_080 Hb_029262_010 Hb_029262_010 Hb_000160_190--Hb_029262_010 Hb_004137_110 Hb_004137_110 Hb_000160_190--Hb_004137_110 Hb_000160_190--Hb_004128_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0509273 0.789816 0.373032 0 0.0103747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0212019 0 0 0.0891553

CAGE analysis