Hb_000035_230

Information

Type -
Description -
Location Contig35: 286483-287308
Sequence    

Annotation

kegg
ID rcu:RCOM_0920850
description Early nodulin 55-2 precursor, putative
nr
ID XP_012076421.1
description PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
swissprot
ID Q9SK27
description Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2
trembl
ID A0A067KER5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07079 PE=4 SV=1
Gene Ontology
ID GO:0009055
description early nodulin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36417: 286473-287384
cDNA
(Sanger)
(ID:Location)		 010_O06.ab1: 286473-287288 , 027_K04.ab1: 286473-287311 , 031_H01.ab1: 286473-287304

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_230 0.0 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
2 Hb_001247_060 0.0670456441 - - zinc finger protein, putative [Ricinus communis]
3 Hb_000089_090 0.0695568345 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
4 Hb_003847_060 0.0797755789 - - syntaxin, putative [Ricinus communis]
5 Hb_012092_040 0.0799265697 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
6 Hb_005398_050 0.0824384321 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
7 Hb_128392_010 0.0828912821 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
8 Hb_009545_060 0.0932352463 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
9 Hb_021576_050 0.0959223957 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
10 Hb_003464_010 0.0963899441 - - conserved hypothetical protein [Ricinus communis]
11 Hb_089140_070 0.0997606298 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
12 Hb_000390_010 0.1005379705 - - PREDICTED: protein CDI [Jatropha curcas]
13 Hb_000527_020 0.1044968116 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
14 Hb_009113_020 0.1052621385 - - PREDICTED: probable polygalacturonase non-catalytic subunit JP650 [Jatropha curcas]
15 Hb_001950_090 0.1065747471 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
16 Hb_001123_330 0.108601205 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
17 Hb_002686_320 0.1116742321 - - syntaxin, putative [Ricinus communis]
18 Hb_007304_020 0.1121209412 - - PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
19 Hb_006588_100 0.1167260676 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000538_290 0.1202266758 - - hypothetical protein RCOM_0303940 [Ricinus communis]

Gene co-expression network

sample Hb_000035_230 Hb_000035_230 Hb_001247_060 Hb_001247_060 Hb_000035_230--Hb_001247_060 Hb_000089_090 Hb_000089_090 Hb_000035_230--Hb_000089_090 Hb_003847_060 Hb_003847_060 Hb_000035_230--Hb_003847_060 Hb_012092_040 Hb_012092_040 Hb_000035_230--Hb_012092_040 Hb_005398_050 Hb_005398_050 Hb_000035_230--Hb_005398_050 Hb_128392_010 Hb_128392_010 Hb_000035_230--Hb_128392_010 Hb_001247_060--Hb_000089_090 Hb_001247_060--Hb_012092_040 Hb_059502_010 Hb_059502_010 Hb_001247_060--Hb_059502_010 Hb_007304_020 Hb_007304_020 Hb_001247_060--Hb_007304_020 Hb_000531_010 Hb_000531_010 Hb_001247_060--Hb_000531_010 Hb_000089_090--Hb_012092_040 Hb_000089_090--Hb_059502_010 Hb_003464_010 Hb_003464_010 Hb_000089_090--Hb_003464_010 Hb_000962_060 Hb_000962_060 Hb_000089_090--Hb_000962_060 Hb_003847_060--Hb_005398_050 Hb_001307_150 Hb_001307_150 Hb_003847_060--Hb_001307_150 Hb_001950_090 Hb_001950_090 Hb_003847_060--Hb_001950_090 Hb_001699_270 Hb_001699_270 Hb_003847_060--Hb_001699_270 Hb_000856_390 Hb_000856_390 Hb_003847_060--Hb_000856_390 Hb_000480_060 Hb_000480_060 Hb_003847_060--Hb_000480_060 Hb_089140_070 Hb_089140_070 Hb_012092_040--Hb_089140_070 Hb_012092_040--Hb_003464_010 Hb_000390_010 Hb_000390_010 Hb_012092_040--Hb_000390_010 Hb_000527_020 Hb_000527_020 Hb_005398_050--Hb_000527_020 Hb_078448_010 Hb_078448_010 Hb_005398_050--Hb_078448_010 Hb_005398_050--Hb_001307_150 Hb_016898_020 Hb_016898_020 Hb_005398_050--Hb_016898_020 Hb_021576_050 Hb_021576_050 Hb_128392_010--Hb_021576_050 Hb_128392_010--Hb_000527_020 Hb_128392_010--Hb_003847_060 Hb_128392_010--Hb_005398_050 Hb_128392_010--Hb_003464_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0687319 1.24698 83.1782 84.255 0.0345381 0.133848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.124728 0 6.23826 2.47112

CAGE analysis