Hb_000089_090

Information

Type -
Description -
Location Contig89: 76328-76729
Sequence    

Annotation

kegg
ID pop:POPTR_0019s12670g
description hypothetical protein
nr
ID XP_002326057.1
description hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PD54
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s12670g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000089_090 0.0 - - hypothetical protein POPTR_0019s12670g [Populus trichocarpa]
2 Hb_001247_060 0.043212558 - - zinc finger protein, putative [Ricinus communis]
3 Hb_012092_040 0.0481250759 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
4 Hb_000035_230 0.0695568345 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
5 Hb_059502_010 0.098733988 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
6 Hb_003464_010 0.0988721489 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000962_060 0.1013204492 - - PREDICTED: uncharacterized protein LOC105646517 [Jatropha curcas]
8 Hb_001123_330 0.1050980376 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
9 Hb_089140_070 0.1078556155 - - PREDICTED: uncharacterized protein LOC105637961 [Jatropha curcas]
10 Hb_007304_020 0.1084622329 - - PREDICTED: uncharacterized protein LOC100256879 [Vitis vinifera]
11 Hb_009545_060 0.108980682 - - PREDICTED: uncharacterized protein LOC105632005 [Jatropha curcas]
12 Hb_003055_160 0.1100451833 - - PREDICTED: S-linalool synthase isoform X1 [Jatropha curcas]
13 Hb_010589_090 0.1171399702 - - Snakin-1 [Glycine soja]
14 Hb_001205_290 0.1176028841 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
15 Hb_000531_010 0.1176328243 transcription factor TF Family: G2-like hypothetical protein POPTR_0018s14830g [Populus trichocarpa]
16 Hb_000390_010 0.1178383971 - - PREDICTED: protein CDI [Jatropha curcas]
17 Hb_128392_010 0.1193295141 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
18 Hb_002970_030 0.1210387291 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001052_020 0.1229148045 - - hypothetical protein JCGZ_26487 [Jatropha curcas]
20 Hb_004724_280 0.1233100153 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000089_090 Hb_000089_090 Hb_001247_060 Hb_001247_060 Hb_000089_090--Hb_001247_060 Hb_012092_040 Hb_012092_040 Hb_000089_090--Hb_012092_040 Hb_000035_230 Hb_000035_230 Hb_000089_090--Hb_000035_230 Hb_059502_010 Hb_059502_010 Hb_000089_090--Hb_059502_010 Hb_003464_010 Hb_003464_010 Hb_000089_090--Hb_003464_010 Hb_000962_060 Hb_000962_060 Hb_000089_090--Hb_000962_060 Hb_001247_060--Hb_012092_040 Hb_001247_060--Hb_000035_230 Hb_001247_060--Hb_059502_010 Hb_007304_020 Hb_007304_020 Hb_001247_060--Hb_007304_020 Hb_000531_010 Hb_000531_010 Hb_001247_060--Hb_000531_010 Hb_089140_070 Hb_089140_070 Hb_012092_040--Hb_089140_070 Hb_012092_040--Hb_000035_230 Hb_012092_040--Hb_003464_010 Hb_000390_010 Hb_000390_010 Hb_012092_040--Hb_000390_010 Hb_003847_060 Hb_003847_060 Hb_000035_230--Hb_003847_060 Hb_005398_050 Hb_005398_050 Hb_000035_230--Hb_005398_050 Hb_128392_010 Hb_128392_010 Hb_000035_230--Hb_128392_010 Hb_059502_010--Hb_000531_010 Hb_059502_010--Hb_007304_020 Hb_004598_020 Hb_004598_020 Hb_059502_010--Hb_004598_020 Hb_033312_100 Hb_033312_100 Hb_059502_010--Hb_033312_100 Hb_180864_010 Hb_180864_010 Hb_059502_010--Hb_180864_010 Hb_000445_260 Hb_000445_260 Hb_003464_010--Hb_000445_260 Hb_001329_050 Hb_001329_050 Hb_003464_010--Hb_001329_050 Hb_010080_050 Hb_010080_050 Hb_003464_010--Hb_010080_050 Hb_003464_010--Hb_000390_010 Hb_003464_010--Hb_000035_230 Hb_001052_020 Hb_001052_020 Hb_000962_060--Hb_001052_020 Hb_009545_060 Hb_009545_060 Hb_000962_060--Hb_009545_060 Hb_000062_280 Hb_000062_280 Hb_000962_060--Hb_000062_280 Hb_000962_060--Hb_012092_040 Hb_000962_060--Hb_001247_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.39318 223.214 306.605 0 0.390707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 17.2554 6.00488

CAGE analysis