Hb_001329_050

Information

Type -
Description -
Location Contig1329: 34336-34695
Sequence    

Annotation

kegg
ID rcu:RCOM_1345220
description hypothetical protein
nr
ID XP_002515220.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RN81
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1345220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000056_290 0.0546167554 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000933_040 0.0639377808 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
4 Hb_003464_010 0.0935633561 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000878_080 0.0999644098 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
6 Hb_120289_010 0.1012597229 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
7 Hb_078448_010 0.1110305769 - - hypothetical protein L484_017526 [Morus notabilis]
8 Hb_000213_020 0.113924193 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005694_170 0.1149709598 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
10 Hb_003376_110 0.1165514541 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002028_270 0.1169320204 - - Pectinesterase-1 precursor, putative [Ricinus communis]
12 Hb_007846_030 0.1192422788 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
13 Hb_000700_020 0.1199697913 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
14 Hb_000527_020 0.1230795833 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
15 Hb_005398_050 0.1234286075 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]
16 Hb_006573_310 0.1242215687 - - Tellurite resistance protein tehA, putative [Ricinus communis]
17 Hb_004880_040 0.124472254 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X1 [Jatropha curcas]
18 Hb_000289_020 0.1244885426 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
19 Hb_118282_020 0.1251443408 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
20 Hb_004005_060 0.1261175875 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]

Gene co-expression network

sample Hb_001329_050 Hb_001329_050 Hb_000056_290 Hb_000056_290 Hb_001329_050--Hb_000056_290 Hb_000933_040 Hb_000933_040 Hb_001329_050--Hb_000933_040 Hb_003464_010 Hb_003464_010 Hb_001329_050--Hb_003464_010 Hb_000878_080 Hb_000878_080 Hb_001329_050--Hb_000878_080 Hb_120289_010 Hb_120289_010 Hb_001329_050--Hb_120289_010 Hb_078448_010 Hb_078448_010 Hb_001329_050--Hb_078448_010 Hb_000056_290--Hb_120289_010 Hb_006573_310 Hb_006573_310 Hb_000056_290--Hb_006573_310 Hb_000056_290--Hb_000933_040 Hb_000056_290--Hb_078448_010 Hb_000527_020 Hb_000527_020 Hb_000056_290--Hb_000527_020 Hb_000213_020 Hb_000213_020 Hb_000933_040--Hb_000213_020 Hb_004005_060 Hb_004005_060 Hb_000933_040--Hb_004005_060 Hb_005694_170 Hb_005694_170 Hb_000933_040--Hb_005694_170 Hb_002028_270 Hb_002028_270 Hb_000933_040--Hb_002028_270 Hb_012092_040 Hb_012092_040 Hb_003464_010--Hb_012092_040 Hb_000445_260 Hb_000445_260 Hb_003464_010--Hb_000445_260 Hb_010080_050 Hb_010080_050 Hb_003464_010--Hb_010080_050 Hb_000390_010 Hb_000390_010 Hb_003464_010--Hb_000390_010 Hb_000035_230 Hb_000035_230 Hb_003464_010--Hb_000035_230 Hb_000878_080--Hb_002028_270 Hb_097292_010 Hb_097292_010 Hb_000878_080--Hb_097292_010 Hb_001856_210 Hb_001856_210 Hb_000878_080--Hb_001856_210 Hb_002894_060 Hb_002894_060 Hb_000878_080--Hb_002894_060 Hb_002203_010 Hb_002203_010 Hb_000878_080--Hb_002203_010 Hb_000878_080--Hb_004005_060 Hb_000162_160 Hb_000162_160 Hb_120289_010--Hb_000162_160 Hb_022845_010 Hb_022845_010 Hb_120289_010--Hb_022845_010 Hb_000700_020 Hb_000700_020 Hb_120289_010--Hb_000700_020 Hb_001322_220 Hb_001322_220 Hb_120289_010--Hb_001322_220 Hb_005398_050 Hb_005398_050 Hb_078448_010--Hb_005398_050 Hb_078448_010--Hb_006573_310 Hb_078448_010--Hb_000527_020 Hb_118282_020 Hb_118282_020 Hb_078448_010--Hb_118282_020 Hb_004774_080 Hb_004774_080 Hb_078448_010--Hb_004774_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.26537 12.8768 11.6219 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.255087 0.653675

CAGE analysis