Hb_000933_040

Information

Type -
Description -
Location Contig933: 81733-85339
Sequence    

Annotation

kegg
ID rcu:RCOM_0837870
description eukaryotic translation initiation factor 2c, putative
nr
ID XP_002522490.1
description eukaryotic translation initiation factor 2c, putative [Ricinus communis]
swissprot
ID Q9C793
description Protein argonaute 7 OS=Arabidopsis thaliana GN=AGO7 PE=2 SV=1
trembl
ID B9S921
description Protein argonaute OS=Ricinus communis GN=RCOM_0837870 PE=3 SV=1
Gene Ontology
ID GO:0003743
description protein argonaute 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62882: 82312-82582 , PASA_asmbl_62884: 83217-85513
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000933_040 0.0 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
2 Hb_001329_050 0.0639377808 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000213_020 0.0903006595 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000056_290 0.0915739185 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004005_060 0.0991082613 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
6 Hb_005694_170 0.1080369219 - - PREDICTED: uncharacterized protein At3g49140 isoform X2 [Jatropha curcas]
7 Hb_002028_270 0.1120409202 - - Pectinesterase-1 precursor, putative [Ricinus communis]
8 Hb_000289_020 0.1158133406 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
9 Hb_001377_370 0.1192938634 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
10 Hb_000878_080 0.1193541564 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
11 Hb_003489_010 0.1194786416 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
12 Hb_003376_110 0.1225580584 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003464_010 0.1273454805 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004225_160 0.1309225833 - - PREDICTED: kiwellin-like [Jatropha curcas]
15 Hb_002203_010 0.1322022118 - - PREDICTED: kinesin-like protein KIF18B isoform X1 [Vitis vinifera]
16 Hb_007846_030 0.1338988013 - - Uncharacterized protein TCM_021839 [Theobroma cacao]
17 Hb_003207_210 0.1339814627 - - PREDICTED: uncharacterized protein LOC105645885 [Jatropha curcas]
18 Hb_078448_010 0.1353493395 - - hypothetical protein L484_017526 [Morus notabilis]
19 Hb_000862_050 0.1357649836 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
20 Hb_007474_020 0.1399306055 - - multicopper oxidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000933_040 Hb_000933_040 Hb_001329_050 Hb_001329_050 Hb_000933_040--Hb_001329_050 Hb_000213_020 Hb_000213_020 Hb_000933_040--Hb_000213_020 Hb_000056_290 Hb_000056_290 Hb_000933_040--Hb_000056_290 Hb_004005_060 Hb_004005_060 Hb_000933_040--Hb_004005_060 Hb_005694_170 Hb_005694_170 Hb_000933_040--Hb_005694_170 Hb_002028_270 Hb_002028_270 Hb_000933_040--Hb_002028_270 Hb_001329_050--Hb_000056_290 Hb_003464_010 Hb_003464_010 Hb_001329_050--Hb_003464_010 Hb_000878_080 Hb_000878_080 Hb_001329_050--Hb_000878_080 Hb_120289_010 Hb_120289_010 Hb_001329_050--Hb_120289_010 Hb_078448_010 Hb_078448_010 Hb_001329_050--Hb_078448_010 Hb_000213_020--Hb_004005_060 Hb_002203_010 Hb_002203_010 Hb_000213_020--Hb_002203_010 Hb_001085_160 Hb_001085_160 Hb_000213_020--Hb_001085_160 Hb_000213_020--Hb_000878_080 Hb_024714_090 Hb_024714_090 Hb_000213_020--Hb_024714_090 Hb_000056_290--Hb_120289_010 Hb_006573_310 Hb_006573_310 Hb_000056_290--Hb_006573_310 Hb_000056_290--Hb_078448_010 Hb_000527_020 Hb_000527_020 Hb_000056_290--Hb_000527_020 Hb_004005_060--Hb_002203_010 Hb_000359_100 Hb_000359_100 Hb_004005_060--Hb_000359_100 Hb_004005_060--Hb_002028_270 Hb_000862_050 Hb_000862_050 Hb_004005_060--Hb_000862_050 Hb_004005_060--Hb_000878_080 Hb_003376_110 Hb_003376_110 Hb_005694_170--Hb_003376_110 Hb_164337_010 Hb_164337_010 Hb_005694_170--Hb_164337_010 Hb_007846_030 Hb_007846_030 Hb_005694_170--Hb_007846_030 Hb_003207_210 Hb_003207_210 Hb_005694_170--Hb_003207_210 Hb_003248_030 Hb_003248_030 Hb_005694_170--Hb_003248_030 Hb_001971_040 Hb_001971_040 Hb_002028_270--Hb_001971_040 Hb_006810_040 Hb_006810_040 Hb_002028_270--Hb_006810_040 Hb_002028_270--Hb_000878_080 Hb_002028_270--Hb_000359_100 Hb_000289_020 Hb_000289_020 Hb_002028_270--Hb_000289_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.382433 2.58519 2.1222 0 0.0054236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.101057 0.141909

CAGE analysis