Hb_000700_020

Information

Type -
Description -
Location Contig700: 18330-23056
Sequence    

Annotation

kegg
ID rcu:RCOM_1721620
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_012085160.1
description PREDICTED: probable pectate lyase 8 [Jatropha curcas]
swissprot
ID Q944R1
description Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1
trembl
ID A0A067JRA4
description Pectate lyase OS=Jatropha curcas GN=JCGZ_17575 PE=3 SV=1
Gene Ontology
ID GO:0030570
description probable pectate lyase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54789: 17919-22675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000700_020 0.0 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
2 Hb_120289_010 0.0918279783 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
3 Hb_064194_010 0.1070936812 - - PREDICTED: endoglucanase 6 [Jatropha curcas]
4 Hb_000056_290 0.1136064521 - - conserved hypothetical protein [Ricinus communis]
5 Hb_109304_010 0.115111374 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
6 Hb_000162_160 0.1152518138 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
7 Hb_128392_010 0.1194407979 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
8 Hb_001329_050 0.1199697913 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001123_330 0.1200530326 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
10 Hb_000527_020 0.1211241955 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
11 Hb_003464_010 0.1215125853 - - conserved hypothetical protein [Ricinus communis]
12 Hb_007474_010 0.1238495446 - - vacuolar invertase [Manihot esculenta]
13 Hb_001152_040 0.1249455144 - - peripheral-type benzodiazepine receptor, putative [Ricinus communis]
14 Hb_021576_050 0.1289602664 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
15 Hb_125781_010 0.1297784194 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_022845_010 0.1303785086 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
17 Hb_000009_100 0.1356240548 transcription factor TF Family: HB hypothetical protein JCGZ_12260 [Jatropha curcas]
18 Hb_004724_280 0.1358538155 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012016_050 0.1368352139 - - hypothetical protein JCGZ_09036 [Jatropha curcas]
20 Hb_001377_140 0.1423231454 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]

Gene co-expression network

sample Hb_000700_020 Hb_000700_020 Hb_120289_010 Hb_120289_010 Hb_000700_020--Hb_120289_010 Hb_064194_010 Hb_064194_010 Hb_000700_020--Hb_064194_010 Hb_000056_290 Hb_000056_290 Hb_000700_020--Hb_000056_290 Hb_109304_010 Hb_109304_010 Hb_000700_020--Hb_109304_010 Hb_000162_160 Hb_000162_160 Hb_000700_020--Hb_000162_160 Hb_128392_010 Hb_128392_010 Hb_000700_020--Hb_128392_010 Hb_120289_010--Hb_000056_290 Hb_120289_010--Hb_000162_160 Hb_022845_010 Hb_022845_010 Hb_120289_010--Hb_022845_010 Hb_001329_050 Hb_001329_050 Hb_120289_010--Hb_001329_050 Hb_001322_220 Hb_001322_220 Hb_120289_010--Hb_001322_220 Hb_001152_040 Hb_001152_040 Hb_064194_010--Hb_001152_040 Hb_000009_100 Hb_000009_100 Hb_064194_010--Hb_000009_100 Hb_132880_020 Hb_132880_020 Hb_064194_010--Hb_132880_020 Hb_177179_020 Hb_177179_020 Hb_064194_010--Hb_177179_020 Hb_064194_010--Hb_109304_010 Hb_000056_290--Hb_001329_050 Hb_006573_310 Hb_006573_310 Hb_000056_290--Hb_006573_310 Hb_000933_040 Hb_000933_040 Hb_000056_290--Hb_000933_040 Hb_078448_010 Hb_078448_010 Hb_000056_290--Hb_078448_010 Hb_000527_020 Hb_000527_020 Hb_000056_290--Hb_000527_020 Hb_009225_030 Hb_009225_030 Hb_109304_010--Hb_009225_030 Hb_104011_010 Hb_104011_010 Hb_109304_010--Hb_104011_010 Hb_185246_010 Hb_185246_010 Hb_109304_010--Hb_185246_010 Hb_121058_010 Hb_121058_010 Hb_109304_010--Hb_121058_010 Hb_000140_010 Hb_000140_010 Hb_109304_010--Hb_000140_010 Hb_001456_010 Hb_001456_010 Hb_109304_010--Hb_001456_010 Hb_000162_160--Hb_001322_220 Hb_000162_160--Hb_000527_020 Hb_001190_030 Hb_001190_030 Hb_000162_160--Hb_001190_030 Hb_056196_020 Hb_056196_020 Hb_000162_160--Hb_056196_020 Hb_000162_160--Hb_022845_010 Hb_021576_050 Hb_021576_050 Hb_128392_010--Hb_021576_050 Hb_128392_010--Hb_000527_020 Hb_000035_230 Hb_000035_230 Hb_128392_010--Hb_000035_230 Hb_003847_060 Hb_003847_060 Hb_128392_010--Hb_003847_060 Hb_005398_050 Hb_005398_050 Hb_128392_010--Hb_005398_050 Hb_003464_010 Hb_003464_010 Hb_128392_010--Hb_003464_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0486989 0.420737 7.99577 7.77409 0.0150426 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0342234 0.0269233 0 0.053795 0.0561293

CAGE analysis