Hb_109304_010

Information

Type -
Description -
Location Contig109304: 9005-9313
Sequence    

Annotation

kegg
ID pop:POPTR_0125s00200g
description hypothetical protein
nr
ID KDP27272.1
description hypothetical protein JCGZ_19971 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19971 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02812: 8980-9566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_109304_010 0.0 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
2 Hb_009225_030 0.0485080424 - - ring finger protein, putative [Ricinus communis]
3 Hb_104011_010 0.0485320205 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
4 Hb_185246_010 0.0486543121 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
5 Hb_121058_010 0.0486589911 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000140_010 0.0486898057 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
7 Hb_001456_010 0.048828368 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_003531_110 0.0488311646 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_001504_250 0.0490135459 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_045150_010 0.0500884445 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
11 Hb_001377_140 0.0507047003 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
12 Hb_003529_020 0.0508819857 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
13 Hb_002490_070 0.0512528765 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
14 Hb_002254_020 0.0514814537 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
15 Hb_000272_060 0.0515489479 - - unnamed protein product [Vitis vinifera]
16 Hb_000012_360 0.0518691103 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
17 Hb_003792_010 0.0520946487 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002759_210 0.0525471027 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
19 Hb_102933_010 0.0543379915 - - Pectate lyase precursor, putative [Ricinus communis]
20 Hb_001279_060 0.0553632903 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]

Gene co-expression network

sample Hb_109304_010 Hb_109304_010 Hb_009225_030 Hb_009225_030 Hb_109304_010--Hb_009225_030 Hb_104011_010 Hb_104011_010 Hb_109304_010--Hb_104011_010 Hb_185246_010 Hb_185246_010 Hb_109304_010--Hb_185246_010 Hb_121058_010 Hb_121058_010 Hb_109304_010--Hb_121058_010 Hb_000140_010 Hb_000140_010 Hb_109304_010--Hb_000140_010 Hb_001456_010 Hb_001456_010 Hb_109304_010--Hb_001456_010 Hb_009225_030--Hb_104011_010 Hb_009225_030--Hb_185246_010 Hb_009225_030--Hb_121058_010 Hb_009225_030--Hb_001456_010 Hb_001504_250 Hb_001504_250 Hb_009225_030--Hb_001504_250 Hb_009225_030--Hb_000140_010 Hb_104011_010--Hb_185246_010 Hb_104011_010--Hb_121058_010 Hb_104011_010--Hb_001456_010 Hb_104011_010--Hb_001504_250 Hb_104011_010--Hb_000140_010 Hb_185246_010--Hb_121058_010 Hb_185246_010--Hb_001456_010 Hb_185246_010--Hb_001504_250 Hb_045150_010 Hb_045150_010 Hb_185246_010--Hb_045150_010 Hb_121058_010--Hb_001456_010 Hb_121058_010--Hb_001504_250 Hb_121058_010--Hb_045150_010 Hb_003531_110 Hb_003531_110 Hb_000140_010--Hb_003531_110 Hb_000140_010--Hb_185246_010 Hb_000140_010--Hb_121058_010 Hb_000140_010--Hb_001456_010 Hb_001456_010--Hb_001504_250 Hb_001456_010--Hb_045150_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.135248 14.1338 14.5487 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis