Hb_000243_230

Information

Type -
Description -
Location Contig243: 194550-195839
Sequence    

Annotation

kegg
ID rcu:RCOM_0779050
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002533302.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID P51884
description Lumican OS=Homo sapiens GN=LUM PE=1 SV=2
trembl
ID B9T4Y3
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0779050 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at4g36180

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 022_D04.ab1: 194554-194712

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_230 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_000071_060 0.1039120992 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008686_040 0.1354778877 - - PREDICTED: uncharacterized protein LOC105632278 isoform X3 [Jatropha curcas]
4 Hb_001140_190 0.1357569364 - - PREDICTED: A-kinase anchor protein 9 [Jatropha curcas]
5 Hb_001662_120 0.1500739824 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
6 Hb_000072_230 0.1547498283 - - hypothetical protein POPTR_0004s10790g [Populus trichocarpa]
7 Hb_000438_160 0.1547867693 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007044_240 0.1588489391 - - PREDICTED: uncharacterized protein LOC105638704 isoform X1 [Jatropha curcas]
9 Hb_002045_160 0.1602797494 - - PREDICTED: DJ-1 protein homolog E-like [Jatropha curcas]
10 Hb_000856_270 0.1607316837 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
11 Hb_000964_050 0.1615362505 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
12 Hb_004143_090 0.1649618803 - - PREDICTED: VIN3-like protein 2 isoform X1 [Jatropha curcas]
13 Hb_000840_080 0.1652871428 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
14 Hb_001817_040 0.1655602238 - - myosin XI, putative [Ricinus communis]
15 Hb_000258_400 0.1658965491 transcription factor TF Family: bHLH transcription regulator, putative [Ricinus communis]
16 Hb_007576_090 0.1675644836 - - lipid transfer protein precursor [Gossypium herbaceum subsp. africanum]
17 Hb_004453_160 0.1683369101 - - conserved hypothetical protein [Ricinus communis]
18 Hb_180535_010 0.1695479653 - - -
19 Hb_000031_240 0.1705488007 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
20 Hb_072952_010 0.1708260517 - - PREDICTED: GDSL esterase/lipase At5g18430-like [Populus euphratica]

Gene co-expression network

sample Hb_000243_230 Hb_000243_230 Hb_000071_060 Hb_000071_060 Hb_000243_230--Hb_000071_060 Hb_008686_040 Hb_008686_040 Hb_000243_230--Hb_008686_040 Hb_001140_190 Hb_001140_190 Hb_000243_230--Hb_001140_190 Hb_001662_120 Hb_001662_120 Hb_000243_230--Hb_001662_120 Hb_000072_230 Hb_000072_230 Hb_000243_230--Hb_000072_230 Hb_000438_160 Hb_000438_160 Hb_000243_230--Hb_000438_160 Hb_000071_060--Hb_008686_040 Hb_000331_170 Hb_000331_170 Hb_000071_060--Hb_000331_170 Hb_000073_040 Hb_000073_040 Hb_000071_060--Hb_000073_040 Hb_000375_220 Hb_000375_220 Hb_000071_060--Hb_000375_220 Hb_000071_060--Hb_000072_230 Hb_000258_400 Hb_000258_400 Hb_008686_040--Hb_000258_400 Hb_072952_010 Hb_072952_010 Hb_008686_040--Hb_072952_010 Hb_072620_010 Hb_072620_010 Hb_008686_040--Hb_072620_010 Hb_007760_060 Hb_007760_060 Hb_008686_040--Hb_007760_060 Hb_008686_040--Hb_000073_040 Hb_000375_100 Hb_000375_100 Hb_008686_040--Hb_000375_100 Hb_001511_210 Hb_001511_210 Hb_001140_190--Hb_001511_210 Hb_001140_190--Hb_000438_160 Hb_005276_140 Hb_005276_140 Hb_001140_190--Hb_005276_140 Hb_001140_190--Hb_000071_060 Hb_001140_190--Hb_000331_170 Hb_001817_040 Hb_001817_040 Hb_001140_190--Hb_001817_040 Hb_002249_010 Hb_002249_010 Hb_001662_120--Hb_002249_010 Hb_118282_020 Hb_118282_020 Hb_001662_120--Hb_118282_020 Hb_001755_040 Hb_001755_040 Hb_001662_120--Hb_001755_040 Hb_014497_070 Hb_014497_070 Hb_001662_120--Hb_014497_070 Hb_002818_060 Hb_002818_060 Hb_001662_120--Hb_002818_060 Hb_000107_360 Hb_000107_360 Hb_000072_230--Hb_000107_360 Hb_000072_230--Hb_000331_170 Hb_000417_090 Hb_000417_090 Hb_000072_230--Hb_000417_090 Hb_000031_240 Hb_000031_240 Hb_000072_230--Hb_000031_240 Hb_011310_170 Hb_011310_170 Hb_000072_230--Hb_011310_170 Hb_000964_050 Hb_000964_050 Hb_000072_230--Hb_000964_050 Hb_000017_200 Hb_000017_200 Hb_000438_160--Hb_000017_200 Hb_000438_160--Hb_000331_170 Hb_000438_160--Hb_000071_060 Hb_000932_110 Hb_000932_110 Hb_000438_160--Hb_000932_110 Hb_001491_020 Hb_001491_020 Hb_000438_160--Hb_001491_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.826594 0.0460922 43.4599 24.6273 0.127618 0.0859609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.30303 0.410016 1.74958 0.11717 11.1346

CAGE analysis