Hb_002249_010

Information

Type -
Description -
Location Contig2249: 5308-8425
Sequence    

Annotation

kegg
ID rcu:RCOM_1504170
description serine carboxypeptidase, putative (EC:3.4.16.6)
nr
ID XP_002511104.1
description serine carboxypeptidase, putative [Ricinus communis]
swissprot
ID Q93Y09
description Serine carboxypeptidase-like 45 OS=Arabidopsis thaliana GN=SCPL45 PE=2 SV=1
trembl
ID B9RA79
description Serine carboxypeptidase, putative OS=Ricinus communis GN=RCOM_1504170 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 45

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23384: 5199-8625
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002249_010 0.0 - - serine carboxypeptidase, putative [Ricinus communis]
2 Hb_001662_120 0.1122179638 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
3 Hb_000567_290 0.1517583913 - - hypothetical protein RCOM_0303940 [Ricinus communis]
4 Hb_004619_090 0.1619013049 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003813_110 0.1683337364 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000418_040 0.1773392055 - - hypothetical protein RCOM_0377590 [Ricinus communis]
7 Hb_118282_020 0.1775967248 - - PREDICTED: uncharacterized protein LOC105631532 isoform X3 [Jatropha curcas]
8 Hb_000243_230 0.1858113359 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_014497_070 0.1869403326 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
10 Hb_004774_080 0.1876293346 - - conserved hypothetical protein [Ricinus communis]
11 Hb_057575_010 0.1903781736 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000640_290 0.1913125227 - - basic helix-loop-helix protein [Populus simonii x Populus nigra]
13 Hb_001410_030 0.1928053092 - - hypothetical protein JCGZ_20419 [Jatropha curcas]
14 Hb_021576_050 0.1943681716 - - PREDICTED: early nodulin-like protein 1 [Jatropha curcas]
15 Hb_007474_010 0.1967418121 - - vacuolar invertase [Manihot esculenta]
16 Hb_005946_020 0.1981923905 - - Pleiotropic drug resistance protein 4 [Triticum urartu]
17 Hb_059226_010 0.2013643792 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
18 Hb_000134_300 0.2025053925 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000162_160 0.2040665256 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
20 Hb_000441_210 0.2064353974 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]

Gene co-expression network

sample Hb_002249_010 Hb_002249_010 Hb_001662_120 Hb_001662_120 Hb_002249_010--Hb_001662_120 Hb_000567_290 Hb_000567_290 Hb_002249_010--Hb_000567_290 Hb_004619_090 Hb_004619_090 Hb_002249_010--Hb_004619_090 Hb_003813_110 Hb_003813_110 Hb_002249_010--Hb_003813_110 Hb_000418_040 Hb_000418_040 Hb_002249_010--Hb_000418_040 Hb_118282_020 Hb_118282_020 Hb_002249_010--Hb_118282_020 Hb_001662_120--Hb_118282_020 Hb_001755_040 Hb_001755_040 Hb_001662_120--Hb_001755_040 Hb_014497_070 Hb_014497_070 Hb_001662_120--Hb_014497_070 Hb_000243_230 Hb_000243_230 Hb_001662_120--Hb_000243_230 Hb_002818_060 Hb_002818_060 Hb_001662_120--Hb_002818_060 Hb_002311_090 Hb_002311_090 Hb_000567_290--Hb_002311_090 Hb_000567_290--Hb_003813_110 Hb_001410_030 Hb_001410_030 Hb_000567_290--Hb_001410_030 Hb_000567_290--Hb_000418_040 Hb_101133_050 Hb_101133_050 Hb_000567_290--Hb_101133_050 Hb_000661_150 Hb_000661_150 Hb_000567_290--Hb_000661_150 Hb_004619_090--Hb_000418_040 Hb_004619_090--Hb_003813_110 Hb_000441_210 Hb_000441_210 Hb_004619_090--Hb_000441_210 Hb_004619_090--Hb_118282_020 Hb_004619_090--Hb_101133_050 Hb_001390_040 Hb_001390_040 Hb_004619_090--Hb_001390_040 Hb_003813_110--Hb_000661_150 Hb_003813_110--Hb_000441_210 Hb_003813_110--Hb_002311_090 Hb_003813_110--Hb_000418_040 Hb_000418_040--Hb_118282_020 Hb_000418_040--Hb_000661_150 Hb_059226_010 Hb_059226_010 Hb_000418_040--Hb_059226_010 Hb_001565_090 Hb_001565_090 Hb_000418_040--Hb_001565_090 Hb_007474_020 Hb_007474_020 Hb_000418_040--Hb_007474_020 Hb_004774_080 Hb_004774_080 Hb_118282_020--Hb_004774_080 Hb_000527_020 Hb_000527_020 Hb_118282_020--Hb_000527_020 Hb_005398_050 Hb_005398_050 Hb_118282_020--Hb_005398_050 Hb_118282_020--Hb_007474_020 Hb_001307_150 Hb_001307_150 Hb_118282_020--Hb_001307_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.397248 0.249106 17.5502 11.9059 0.0435977 0.0308798
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.968026 0.407965 0.611008 0 0.963532

CAGE analysis