Hb_014497_070

Information

Type -
Description -
Location Contig14497: 58245-60584
Sequence    

Annotation

kegg
ID rcu:RCOM_1602240
description CDK, putative (EC:2.7.11.23)
nr
ID XP_012073556.1
description PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
swissprot
ID Q8LG64
description Cyclin-dependent kinase B2-2 OS=Arabidopsis thaliana GN=CDKB2-2 PE=1 SV=2
trembl
ID A0A067KP42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08024 PE=4 SV=1
Gene Ontology
ID GO:0005524
description cyclin-dependent kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11700: 59926-60594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014497_070 0.0 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
2 Hb_010705_040 0.1034584561 - - PREDICTED: kinesin-4 [Jatropha curcas]
3 Hb_011360_130 0.1090124613 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001755_040 0.1198891021 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
5 Hb_002205_180 0.1200300324 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
6 Hb_002232_310 0.1242341378 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
7 Hb_000441_210 0.1256735198 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
8 Hb_001501_070 0.1276133077 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
9 Hb_007474_020 0.1319338294 - - multicopper oxidase, putative [Ricinus communis]
10 Hb_003599_060 0.1323882541 - - calmodulin binding protein, putative [Ricinus communis]
11 Hb_004102_090 0.1364794612 transcription factor TF Family: CPP hypothetical protein JCGZ_06186 [Jatropha curcas]
12 Hb_101133_050 0.1366319202 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
13 Hb_000936_030 0.1369585827 - - hypothetical protein RCOM_0615680 [Ricinus communis]
14 Hb_012753_150 0.1385793973 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
15 Hb_003878_060 0.1397940435 - - hypothetical protein B456_007G326900, partial [Gossypium raimondii]
16 Hb_003109_010 0.1398015164 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
17 Hb_004619_090 0.1419272358 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008725_240 0.1422865741 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000034_150 0.1423579463 - - PREDICTED: kinesin-like protein BC2 [Jatropha curcas]
20 Hb_000069_510 0.1434710094 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]

Gene co-expression network

sample Hb_014497_070 Hb_014497_070 Hb_010705_040 Hb_010705_040 Hb_014497_070--Hb_010705_040 Hb_011360_130 Hb_011360_130 Hb_014497_070--Hb_011360_130 Hb_001755_040 Hb_001755_040 Hb_014497_070--Hb_001755_040 Hb_002205_180 Hb_002205_180 Hb_014497_070--Hb_002205_180 Hb_002232_310 Hb_002232_310 Hb_014497_070--Hb_002232_310 Hb_000441_210 Hb_000441_210 Hb_014497_070--Hb_000441_210 Hb_000364_140 Hb_000364_140 Hb_010705_040--Hb_000364_140 Hb_010705_040--Hb_000441_210 Hb_004963_020 Hb_004963_020 Hb_010705_040--Hb_004963_020 Hb_004102_090 Hb_004102_090 Hb_010705_040--Hb_004102_090 Hb_010705_040--Hb_002205_180 Hb_000265_100 Hb_000265_100 Hb_010705_040--Hb_000265_100 Hb_001501_070 Hb_001501_070 Hb_011360_130--Hb_001501_070 Hb_008406_100 Hb_008406_100 Hb_011360_130--Hb_008406_100 Hb_011360_130--Hb_000441_210 Hb_000367_240 Hb_000367_240 Hb_011360_130--Hb_000367_240 Hb_001478_020 Hb_001478_020 Hb_011360_130--Hb_001478_020 Hb_001755_040--Hb_002232_310 Hb_004109_100 Hb_004109_100 Hb_001755_040--Hb_004109_100 Hb_000936_030 Hb_000936_030 Hb_001755_040--Hb_000936_030 Hb_007574_020 Hb_007574_020 Hb_001755_040--Hb_007574_020 Hb_003935_090 Hb_003935_090 Hb_001755_040--Hb_003935_090 Hb_001755_040--Hb_010705_040 Hb_002205_180--Hb_004102_090 Hb_000189_350 Hb_000189_350 Hb_002205_180--Hb_000189_350 Hb_002205_180--Hb_000441_210 Hb_006520_030 Hb_006520_030 Hb_002205_180--Hb_006520_030 Hb_033152_060 Hb_033152_060 Hb_002205_180--Hb_033152_060 Hb_002232_310--Hb_003935_090 Hb_002232_310--Hb_010705_040 Hb_003109_010 Hb_003109_010 Hb_002232_310--Hb_003109_010 Hb_002232_310--Hb_004109_100 Hb_002232_310--Hb_007574_020 Hb_000441_210--Hb_004963_020 Hb_000441_210--Hb_004102_090 Hb_001454_180 Hb_001454_180 Hb_000441_210--Hb_001454_180 Hb_001168_030 Hb_001168_030 Hb_000441_210--Hb_001168_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.218552 0.530823 9.95666 4.38747 0.0524398 0.115377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0833004 0.425908 0.304385 0.380758 0.677189

CAGE analysis