Hb_011360_130

Information

Type -
Description -
Location Contig11360: 68160-70863
Sequence    

Annotation

kegg
ID rcu:RCOM_0524800
description hypothetical protein
nr
ID XP_002526092.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I2H7
description Protein TPX2 OS=Arabidopsis thaliana GN=TPX2 PE=1 SV=1
trembl
ID B9SJC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0524800 PE=4 SV=1
Gene Ontology
ID GO:0005819
description tpx2 protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04097: 68058-68523 , PASA_asmbl_04098: 68813-69400 , PASA_asmbl_04099: 69494-70032
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011360_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_014497_070 0.1090124613 - - PREDICTED: cyclin-dependent kinase B2-2 [Jatropha curcas]
3 Hb_001501_070 0.1266176623 - - PREDICTED: condensin complex subunit 2 [Jatropha curcas]
4 Hb_008406_100 0.1269238675 - - PREDICTED: protein TPX2 isoform X2 [Jatropha curcas]
5 Hb_000441_210 0.1333277283 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
6 Hb_000367_240 0.1354497861 - - hypothetical protein JCGZ_11682 [Jatropha curcas]
7 Hb_001478_020 0.1356303325 desease resistance Gene Name: AAA thyroid hormone receptor interactor, putative [Ricinus communis]
8 Hb_000365_210 0.1399799212 - - PREDICTED: cell division control protein 2 homolog C [Jatropha curcas]
9 Hb_010705_040 0.1424914112 - - PREDICTED: kinesin-4 [Jatropha curcas]
10 Hb_002007_280 0.1457376557 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
11 Hb_002232_310 0.1462714698 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
12 Hb_000020_040 0.1473993351 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
13 Hb_010180_030 0.150227145 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
14 Hb_001454_180 0.156569382 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
15 Hb_001761_010 0.1573856419 - - PREDICTED: uncharacterized protein LOC105639282 [Jatropha curcas]
16 Hb_000960_120 0.157441326 - - PREDICTED: cell division cycle 20.1, cofactor of APC complex-like [Jatropha curcas]
17 Hb_002007_040 0.1617316834 - - unnamed protein product [Coffea canephora]
18 Hb_004963_020 0.1622747069 - - PREDICTED: patellin-4 [Populus euphratica]
19 Hb_001279_050 0.1627503693 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
20 Hb_000748_100 0.1636938259 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]

Gene co-expression network

sample Hb_011360_130 Hb_011360_130 Hb_014497_070 Hb_014497_070 Hb_011360_130--Hb_014497_070 Hb_001501_070 Hb_001501_070 Hb_011360_130--Hb_001501_070 Hb_008406_100 Hb_008406_100 Hb_011360_130--Hb_008406_100 Hb_000441_210 Hb_000441_210 Hb_011360_130--Hb_000441_210 Hb_000367_240 Hb_000367_240 Hb_011360_130--Hb_000367_240 Hb_001478_020 Hb_001478_020 Hb_011360_130--Hb_001478_020 Hb_010705_040 Hb_010705_040 Hb_014497_070--Hb_010705_040 Hb_001755_040 Hb_001755_040 Hb_014497_070--Hb_001755_040 Hb_002205_180 Hb_002205_180 Hb_014497_070--Hb_002205_180 Hb_002232_310 Hb_002232_310 Hb_014497_070--Hb_002232_310 Hb_014497_070--Hb_000441_210 Hb_001501_070--Hb_001478_020 Hb_038044_010 Hb_038044_010 Hb_001501_070--Hb_038044_010 Hb_010180_030 Hb_010180_030 Hb_001501_070--Hb_010180_030 Hb_000365_210 Hb_000365_210 Hb_001501_070--Hb_000365_210 Hb_029510_130 Hb_029510_130 Hb_001501_070--Hb_029510_130 Hb_024973_020 Hb_024973_020 Hb_001501_070--Hb_024973_020 Hb_005162_130 Hb_005162_130 Hb_008406_100--Hb_005162_130 Hb_002007_280 Hb_002007_280 Hb_008406_100--Hb_002007_280 Hb_000345_410 Hb_000345_410 Hb_008406_100--Hb_000345_410 Hb_008406_100--Hb_024973_020 Hb_008406_100--Hb_000365_210 Hb_008406_100--Hb_001501_070 Hb_004963_020 Hb_004963_020 Hb_000441_210--Hb_004963_020 Hb_004102_090 Hb_004102_090 Hb_000441_210--Hb_004102_090 Hb_000441_210--Hb_010705_040 Hb_001454_180 Hb_001454_180 Hb_000441_210--Hb_001454_180 Hb_000441_210--Hb_002205_180 Hb_001168_030 Hb_001168_030 Hb_000441_210--Hb_001168_030 Hb_000748_100 Hb_000748_100 Hb_000367_240--Hb_000748_100 Hb_001279_050 Hb_001279_050 Hb_000367_240--Hb_001279_050 Hb_114292_010 Hb_114292_010 Hb_000367_240--Hb_114292_010 Hb_000367_240--Hb_001454_180 Hb_000347_160 Hb_000347_160 Hb_000367_240--Hb_000347_160 Hb_001478_020--Hb_010180_030 Hb_001478_020--Hb_038044_010 Hb_001780_080 Hb_001780_080 Hb_001478_020--Hb_001780_080 Hb_003784_040 Hb_003784_040 Hb_001478_020--Hb_003784_040 Hb_001478_020--Hb_029510_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.555203 0.454686 14.2822 4.28362 0.168299 0.224758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.242752 0.42971 0.628523 0.438189 0.449952

CAGE analysis