Hb_000748_100

Information

Type -
Description -
Location Contig748: 137889-138924
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06160g
description hypothetical protein
nr
ID XP_006386286.1
description hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
swissprot
ID Q9S728
description Protodermal factor 1 OS=Arabidopsis thaliana GN=PDF1 PE=2 SV=1
trembl
ID U5GKR8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06160g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56745: 138264-139082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000748_100 0.0 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
2 Hb_004800_030 0.1123126879 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
3 Hb_001279_050 0.1209098598 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
4 Hb_002473_030 0.1302380012 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
5 Hb_005649_050 0.1331775857 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001454_180 0.1363685674 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
7 Hb_004963_020 0.1366561701 - - PREDICTED: patellin-4 [Populus euphratica]
8 Hb_000367_240 0.1371660519 - - hypothetical protein JCGZ_11682 [Jatropha curcas]
9 Hb_006788_130 0.1379378879 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
10 Hb_001564_100 0.1386974818 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
11 Hb_002837_030 0.1420742325 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004449_160 0.1435783895 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001061_010 0.1456978829 - - PREDICTED: uncharacterized protein LOC100243595 [Vitis vinifera]
14 Hb_000084_230 0.148893312 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
15 Hb_000984_230 0.1497963437 - - -
16 Hb_074660_010 0.1503479863 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
17 Hb_002197_010 0.150376472 - - cyclin d, putative [Ricinus communis]
18 Hb_001864_040 0.1560273357 - - PREDICTED: kinesin-1 [Jatropha curcas]
19 Hb_007558_110 0.1561164813 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
20 Hb_002307_040 0.1586913373 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000748_100 Hb_000748_100 Hb_004800_030 Hb_004800_030 Hb_000748_100--Hb_004800_030 Hb_001279_050 Hb_001279_050 Hb_000748_100--Hb_001279_050 Hb_002473_030 Hb_002473_030 Hb_000748_100--Hb_002473_030 Hb_005649_050 Hb_005649_050 Hb_000748_100--Hb_005649_050 Hb_001454_180 Hb_001454_180 Hb_000748_100--Hb_001454_180 Hb_004963_020 Hb_004963_020 Hb_000748_100--Hb_004963_020 Hb_004117_240 Hb_004117_240 Hb_004800_030--Hb_004117_240 Hb_074660_010 Hb_074660_010 Hb_004800_030--Hb_074660_010 Hb_006788_130 Hb_006788_130 Hb_004800_030--Hb_006788_130 Hb_001061_010 Hb_001061_010 Hb_004800_030--Hb_001061_010 Hb_169136_010 Hb_169136_010 Hb_004800_030--Hb_169136_010 Hb_028487_120 Hb_028487_120 Hb_001279_050--Hb_028487_120 Hb_002307_040 Hb_002307_040 Hb_001279_050--Hb_002307_040 Hb_000367_240 Hb_000367_240 Hb_001279_050--Hb_000367_240 Hb_000069_400 Hb_000069_400 Hb_001279_050--Hb_000069_400 Hb_002221_010 Hb_002221_010 Hb_001279_050--Hb_002221_010 Hb_002473_030--Hb_005649_050 Hb_002473_030--Hb_004963_020 Hb_004032_390 Hb_004032_390 Hb_002473_030--Hb_004032_390 Hb_001220_020 Hb_001220_020 Hb_002473_030--Hb_001220_020 Hb_002837_030 Hb_002837_030 Hb_002473_030--Hb_002837_030 Hb_003398_050 Hb_003398_050 Hb_002473_030--Hb_003398_050 Hb_005649_050--Hb_004963_020 Hb_002197_010 Hb_002197_010 Hb_005649_050--Hb_002197_010 Hb_001210_030 Hb_001210_030 Hb_005649_050--Hb_001210_030 Hb_005649_050--Hb_002837_030 Hb_162378_020 Hb_162378_020 Hb_005649_050--Hb_162378_020 Hb_001454_180--Hb_004963_020 Hb_010021_060 Hb_010021_060 Hb_001454_180--Hb_010021_060 Hb_000441_210 Hb_000441_210 Hb_001454_180--Hb_000441_210 Hb_000028_530 Hb_000028_530 Hb_001454_180--Hb_000028_530 Hb_007558_110 Hb_007558_110 Hb_001454_180--Hb_007558_110 Hb_001454_180--Hb_002473_030 Hb_000316_070 Hb_000316_070 Hb_004963_020--Hb_000316_070 Hb_001168_030 Hb_001168_030 Hb_004963_020--Hb_001168_030 Hb_001864_040 Hb_001864_040 Hb_004963_020--Hb_001864_040 Hb_004963_020--Hb_002837_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.201272 0.148429 8.5521 1.67758 0.0537198 0.0244409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0635843 0 0.0908066 0.101036 0.100806

CAGE analysis