Hb_000069_400

Information

Type -
Description -
Location Contig69: 425403-425891
Sequence    

Annotation

kegg
ID rcu:RCOM_0718470
description RING-H2 finger protein ATL3K, putative
nr
ID XP_002523355.1
description RING-H2 finger protein ATL3K, putative [Ricinus communis]
swissprot
ID P0CH01
description Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana GN=ATL21A PE=3 SV=1
trembl
ID B9SBI6
description RING-H2 finger protein ATL3K, putative OS=Ricinus communis GN=RCOM_0718470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_400 0.0 - - RING-H2 finger protein ATL3K, putative [Ricinus communis]
2 Hb_004449_160 0.1416138425 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001279_050 0.1535668966 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
4 Hb_002307_040 0.1654313864 - - DNA binding protein, putative [Ricinus communis]
5 Hb_007120_020 0.1728644966 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000748_100 0.1729868472 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
7 Hb_171646_010 0.1852465748 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
8 Hb_001952_100 0.1863436077 - - PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
9 Hb_183719_010 0.1959179124 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
10 Hb_001433_120 0.1968477916 - - hypothetical protein CICLE_v10003574mg, partial [Citrus clementina]
11 Hb_000367_240 0.202549043 - - hypothetical protein JCGZ_11682 [Jatropha curcas]
12 Hb_021622_010 0.2068289273 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
13 Hb_000574_520 0.2071844826 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
14 Hb_032223_010 0.2073738839 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_000077_430 0.2081181787 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
16 Hb_000227_010 0.2087208118 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
17 Hb_005854_060 0.210871965 - - short-chain dehydrogenase, putative [Ricinus communis]
18 Hb_004800_030 0.2114758608 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
19 Hb_000984_230 0.211525402 - - -
20 Hb_000165_270 0.2121939126 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000069_400 Hb_000069_400 Hb_004449_160 Hb_004449_160 Hb_000069_400--Hb_004449_160 Hb_001279_050 Hb_001279_050 Hb_000069_400--Hb_001279_050 Hb_002307_040 Hb_002307_040 Hb_000069_400--Hb_002307_040 Hb_007120_020 Hb_007120_020 Hb_000069_400--Hb_007120_020 Hb_000748_100 Hb_000748_100 Hb_000069_400--Hb_000748_100 Hb_171646_010 Hb_171646_010 Hb_000069_400--Hb_171646_010 Hb_004800_030 Hb_004800_030 Hb_004449_160--Hb_004800_030 Hb_074660_010 Hb_074660_010 Hb_004449_160--Hb_074660_010 Hb_004449_160--Hb_171646_010 Hb_169136_010 Hb_169136_010 Hb_004449_160--Hb_169136_010 Hb_004449_160--Hb_000748_100 Hb_028487_120 Hb_028487_120 Hb_001279_050--Hb_028487_120 Hb_001279_050--Hb_000748_100 Hb_001279_050--Hb_002307_040 Hb_000367_240 Hb_000367_240 Hb_001279_050--Hb_000367_240 Hb_002221_010 Hb_002221_010 Hb_001279_050--Hb_002221_010 Hb_005686_100 Hb_005686_100 Hb_002307_040--Hb_005686_100 Hb_002307_040--Hb_000748_100 Hb_001433_120 Hb_001433_120 Hb_002307_040--Hb_001433_120 Hb_002307_040--Hb_002221_010 Hb_001952_100 Hb_001952_100 Hb_007120_020--Hb_001952_100 Hb_000763_030 Hb_000763_030 Hb_007120_020--Hb_000763_030 Hb_000227_010 Hb_000227_010 Hb_007120_020--Hb_000227_010 Hb_004722_050 Hb_004722_050 Hb_007120_020--Hb_004722_050 Hb_001926_050 Hb_001926_050 Hb_007120_020--Hb_001926_050 Hb_000514_010 Hb_000514_010 Hb_007120_020--Hb_000514_010 Hb_000748_100--Hb_004800_030 Hb_002473_030 Hb_002473_030 Hb_000748_100--Hb_002473_030 Hb_005649_050 Hb_005649_050 Hb_000748_100--Hb_005649_050 Hb_001454_180 Hb_001454_180 Hb_000748_100--Hb_001454_180 Hb_004963_020 Hb_004963_020 Hb_000748_100--Hb_004963_020 Hb_000077_430 Hb_000077_430 Hb_171646_010--Hb_000077_430 Hb_021622_010 Hb_021622_010 Hb_171646_010--Hb_021622_010 Hb_014109_030 Hb_014109_030 Hb_171646_010--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_171646_010--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_171646_010--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_171646_010--Hb_004447_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.237626 0.0510486 4.70154 0.476509 0.059926 0.114496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0455709 0

CAGE analysis