Hb_004449_160

Information

Type -
Description -
Location Contig4449: 103769-107130
Sequence    

Annotation

kegg
ID rcu:RCOM_0622130
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002525575.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9SHV6
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0622130 PE=4 SV=1
Gene Ontology
ID GO:0004672
description inactive protein kinase selmodraft_444075-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42840: 104300-104574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_160 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_004800_030 0.1258663208 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP7-like [Jatropha curcas]
3 Hb_074660_010 0.1327280841 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
4 Hb_171646_010 0.1374064709 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
5 Hb_169136_010 0.1400854906 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000069_400 0.1416138425 - - RING-H2 finger protein ATL3K, putative [Ricinus communis]
7 Hb_000748_100 0.1435783895 - - hypothetical protein POPTR_0002s06160g [Populus trichocarpa]
8 Hb_006142_020 0.146289837 - - JHL25P11.12 [Jatropha curcas]
9 Hb_006788_130 0.1474836198 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
10 Hb_064971_010 0.1482190289 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
11 Hb_000227_010 0.1487276059 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
12 Hb_004722_050 0.1506859577 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
13 Hb_000514_010 0.1508040846 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
14 Hb_004117_240 0.1508691089 - - protease inhibitor/seed storage/ltp family [Cicer arietinum]
15 Hb_001171_020 0.1511470424 - - PREDICTED: gibberellin 3-beta-dioxygenase 3-like [Citrus sinensis]
16 Hb_183719_010 0.1511836415 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
17 Hb_001926_050 0.1512443282 - - PREDICTED: peroxidase 19 [Jatropha curcas]
18 Hb_001372_010 0.1514216365 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_004598_010 0.1514548378 - - PREDICTED: 11-beta-hydroxysteroid dehydrogenase-like 5 [Jatropha curcas]
20 Hb_182291_010 0.1515848172 - - hypothetical protein CICLE_v10029654mg [Citrus clementina]

Gene co-expression network

sample Hb_004449_160 Hb_004449_160 Hb_004800_030 Hb_004800_030 Hb_004449_160--Hb_004800_030 Hb_074660_010 Hb_074660_010 Hb_004449_160--Hb_074660_010 Hb_171646_010 Hb_171646_010 Hb_004449_160--Hb_171646_010 Hb_169136_010 Hb_169136_010 Hb_004449_160--Hb_169136_010 Hb_000069_400 Hb_000069_400 Hb_004449_160--Hb_000069_400 Hb_000748_100 Hb_000748_100 Hb_004449_160--Hb_000748_100 Hb_004117_240 Hb_004117_240 Hb_004800_030--Hb_004117_240 Hb_004800_030--Hb_074660_010 Hb_006788_130 Hb_006788_130 Hb_004800_030--Hb_006788_130 Hb_001061_010 Hb_001061_010 Hb_004800_030--Hb_001061_010 Hb_004800_030--Hb_000748_100 Hb_004800_030--Hb_169136_010 Hb_000527_030 Hb_000527_030 Hb_074660_010--Hb_000527_030 Hb_001153_230 Hb_001153_230 Hb_074660_010--Hb_001153_230 Hb_001564_100 Hb_001564_100 Hb_074660_010--Hb_001564_100 Hb_000157_060 Hb_000157_060 Hb_074660_010--Hb_000157_060 Hb_004007_080 Hb_004007_080 Hb_074660_010--Hb_004007_080 Hb_002837_120 Hb_002837_120 Hb_074660_010--Hb_002837_120 Hb_000077_430 Hb_000077_430 Hb_171646_010--Hb_000077_430 Hb_021622_010 Hb_021622_010 Hb_171646_010--Hb_021622_010 Hb_014109_030 Hb_014109_030 Hb_171646_010--Hb_014109_030 Hb_000844_120 Hb_000844_120 Hb_171646_010--Hb_000844_120 Hb_003994_210 Hb_003994_210 Hb_171646_010--Hb_003994_210 Hb_004447_040 Hb_004447_040 Hb_171646_010--Hb_004447_040 Hb_006142_020 Hb_006142_020 Hb_169136_010--Hb_006142_020 Hb_032011_020 Hb_032011_020 Hb_169136_010--Hb_032011_020 Hb_169136_010--Hb_002837_120 Hb_023558_010 Hb_023558_010 Hb_169136_010--Hb_023558_010 Hb_007975_070 Hb_007975_070 Hb_169136_010--Hb_007975_070 Hb_105767_030 Hb_105767_030 Hb_169136_010--Hb_105767_030 Hb_001279_050 Hb_001279_050 Hb_000069_400--Hb_001279_050 Hb_002307_040 Hb_002307_040 Hb_000069_400--Hb_002307_040 Hb_007120_020 Hb_007120_020 Hb_000069_400--Hb_007120_020 Hb_000069_400--Hb_000748_100 Hb_000069_400--Hb_171646_010 Hb_000748_100--Hb_001279_050 Hb_002473_030 Hb_002473_030 Hb_000748_100--Hb_002473_030 Hb_005649_050 Hb_005649_050 Hb_000748_100--Hb_005649_050 Hb_001454_180 Hb_001454_180 Hb_000748_100--Hb_001454_180 Hb_004963_020 Hb_004963_020 Hb_000748_100--Hb_004963_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0240163 0.0431849 2.29872 0.392857 0 0.0448197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.013775 0

CAGE analysis