Hb_005686_100

Information

Type -
Description -
Location Contig5686: 84224-85846
Sequence    

Annotation

kegg
ID rcu:RCOM_1078510
description hypothetical protein
nr
ID XP_002514850.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9V3X4
description Seipin OS=Drosophila melanogaster GN=Seipin PE=2 SV=1
trembl
ID B9RM81
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1078510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005686_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004586_310 0.1237175806 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005694_070 0.1556168922 - - kinase, putative [Ricinus communis]
4 Hb_002307_040 0.1568321884 - - DNA binding protein, putative [Ricinus communis]
5 Hb_000069_250 0.1892349589 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
6 Hb_114292_010 0.1922438579 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003762_010 0.1939581378 - - -
8 Hb_002613_030 0.1962071488 transcription factor TF Family: GRF conserved hypothetical protein [Ricinus communis]
9 Hb_001143_200 0.2015704287 transcription factor TF Family: NAC NAC domain protein [Glycine max]
10 Hb_010578_020 0.2017021354 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_003935_050 0.2057295306 - - protein with unknown function [Ricinus communis]
12 Hb_007919_070 0.2065842029 - - hypothetical protein POPTR_0005s28110g [Populus trichocarpa]
13 Hb_052764_120 0.2079078047 - - PREDICTED: uncharacterized protein LOC103941142 [Pyrus x bretschneideri]
14 Hb_123475_020 0.2088647754 - - -
15 Hb_000170_080 0.2089063903 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
16 Hb_000083_110 0.2099191092 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
17 Hb_002218_050 0.2113140327 - - SSXT family protein isoform 2, partial [Theobroma cacao]
18 Hb_002435_010 0.2120064343 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
19 Hb_004724_250 0.213065548 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
20 Hb_183719_010 0.2131461363 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_005686_100 Hb_005686_100 Hb_004586_310 Hb_004586_310 Hb_005686_100--Hb_004586_310 Hb_005694_070 Hb_005694_070 Hb_005686_100--Hb_005694_070 Hb_002307_040 Hb_002307_040 Hb_005686_100--Hb_002307_040 Hb_000069_250 Hb_000069_250 Hb_005686_100--Hb_000069_250 Hb_114292_010 Hb_114292_010 Hb_005686_100--Hb_114292_010 Hb_003762_010 Hb_003762_010 Hb_005686_100--Hb_003762_010 Hb_004586_310--Hb_114292_010 Hb_004586_310--Hb_005694_070 Hb_001007_090 Hb_001007_090 Hb_004586_310--Hb_001007_090 Hb_001143_200 Hb_001143_200 Hb_004586_310--Hb_001143_200 Hb_002221_010 Hb_002221_010 Hb_004586_310--Hb_002221_010 Hb_005694_070--Hb_001007_090 Hb_000521_190 Hb_000521_190 Hb_005694_070--Hb_000521_190 Hb_123475_020 Hb_123475_020 Hb_005694_070--Hb_123475_020 Hb_059481_010 Hb_059481_010 Hb_005694_070--Hb_059481_010 Hb_001279_050 Hb_001279_050 Hb_002307_040--Hb_001279_050 Hb_000748_100 Hb_000748_100 Hb_002307_040--Hb_000748_100 Hb_001433_120 Hb_001433_120 Hb_002307_040--Hb_001433_120 Hb_000069_400 Hb_000069_400 Hb_002307_040--Hb_000069_400 Hb_002307_040--Hb_002221_010 Hb_010578_020 Hb_010578_020 Hb_000069_250--Hb_010578_020 Hb_009554_020 Hb_009554_020 Hb_000069_250--Hb_009554_020 Hb_000069_250--Hb_001433_120 Hb_005015_040 Hb_005015_040 Hb_000069_250--Hb_005015_040 Hb_136620_010 Hb_136620_010 Hb_000069_250--Hb_136620_010 Hb_000280_100 Hb_000280_100 Hb_000069_250--Hb_000280_100 Hb_001935_040 Hb_001935_040 Hb_114292_010--Hb_001935_040 Hb_000142_030 Hb_000142_030 Hb_114292_010--Hb_000142_030 Hb_002218_050 Hb_002218_050 Hb_114292_010--Hb_002218_050 Hb_000115_190 Hb_000115_190 Hb_114292_010--Hb_000115_190 Hb_000347_160 Hb_000347_160 Hb_114292_010--Hb_000347_160 Hb_000367_240 Hb_000367_240 Hb_114292_010--Hb_000367_240 Hb_002613_030 Hb_002613_030 Hb_003762_010--Hb_002613_030 Hb_000896_130 Hb_000896_130 Hb_003762_010--Hb_000896_130 Hb_052764_120 Hb_052764_120 Hb_003762_010--Hb_052764_120 Hb_005348_130 Hb_005348_130 Hb_003762_010--Hb_005348_130 Hb_003762_010--Hb_010578_020 Hb_003207_220 Hb_003207_220 Hb_003762_010--Hb_003207_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.227923 1.35497 8.6675 0.682311 0.212813 0.157158
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.15279 0.080112 0 0 0.0819212

CAGE analysis