Hb_123475_020

Information

Type -
Description -
Location Contig123475: 20351-20551
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123475_020 0.0 - - -
2 Hb_002874_210 0.1498917292 - - conserved hypothetical protein [Ricinus communis]
3 Hb_034310_010 0.1893542036 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
4 Hb_028639_040 0.1894291618 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
5 Hb_004495_010 0.1936941737 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
6 Hb_107174_010 0.2062546056 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_005686_100 0.2088647754 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000170_080 0.2112019213 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
9 Hb_010994_020 0.2136591169 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
10 Hb_127372_010 0.2164824421 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
11 Hb_001486_210 0.217491783 - - -
12 Hb_009979_010 0.2189422027 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
13 Hb_002999_150 0.2195810356 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
14 Hb_183192_010 0.2196379101 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
15 Hb_002435_010 0.220413595 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
16 Hb_001007_090 0.2210881437 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
17 Hb_003207_220 0.2221131216 transcription factor TF Family: AP2 PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
18 Hb_000953_180 0.2229739929 - - -
19 Hb_000866_430 0.2262576738 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB6 [Jatropha curcas]
20 Hb_000574_270 0.2293226209 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]

Gene co-expression network

sample Hb_123475_020 Hb_123475_020 Hb_002874_210 Hb_002874_210 Hb_123475_020--Hb_002874_210 Hb_034310_010 Hb_034310_010 Hb_123475_020--Hb_034310_010 Hb_028639_040 Hb_028639_040 Hb_123475_020--Hb_028639_040 Hb_004495_010 Hb_004495_010 Hb_123475_020--Hb_004495_010 Hb_107174_010 Hb_107174_010 Hb_123475_020--Hb_107174_010 Hb_005686_100 Hb_005686_100 Hb_123475_020--Hb_005686_100 Hb_000340_070 Hb_000340_070 Hb_002874_210--Hb_000340_070 Hb_000574_270 Hb_000574_270 Hb_002874_210--Hb_000574_270 Hb_000604_080 Hb_000604_080 Hb_002874_210--Hb_000604_080 Hb_000953_180 Hb_000953_180 Hb_002874_210--Hb_000953_180 Hb_000365_110 Hb_000365_110 Hb_002874_210--Hb_000365_110 Hb_032202_130 Hb_032202_130 Hb_034310_010--Hb_032202_130 Hb_000083_110 Hb_000083_110 Hb_034310_010--Hb_000083_110 Hb_011161_030 Hb_011161_030 Hb_034310_010--Hb_011161_030 Hb_173029_030 Hb_173029_030 Hb_034310_010--Hb_173029_030 Hb_034310_010--Hb_004495_010 Hb_004021_090 Hb_004021_090 Hb_028639_040--Hb_004021_090 Hb_000787_010 Hb_000787_010 Hb_028639_040--Hb_000787_010 Hb_001762_050 Hb_001762_050 Hb_028639_040--Hb_001762_050 Hb_028639_040--Hb_002874_210 Hb_003768_060 Hb_003768_060 Hb_028639_040--Hb_003768_060 Hb_183192_010 Hb_183192_010 Hb_004495_010--Hb_183192_010 Hb_000521_180 Hb_000521_180 Hb_004495_010--Hb_000521_180 Hb_065755_020 Hb_065755_020 Hb_004495_010--Hb_065755_020 Hb_074184_010 Hb_074184_010 Hb_004495_010--Hb_074184_010 Hb_009979_010 Hb_009979_010 Hb_004495_010--Hb_009979_010 Hb_002999_150 Hb_002999_150 Hb_107174_010--Hb_002999_150 Hb_010223_010 Hb_010223_010 Hb_107174_010--Hb_010223_010 Hb_000192_030 Hb_000192_030 Hb_107174_010--Hb_000192_030 Hb_003207_220 Hb_003207_220 Hb_107174_010--Hb_003207_220 Hb_007894_040 Hb_007894_040 Hb_107174_010--Hb_007894_040 Hb_071654_010 Hb_071654_010 Hb_107174_010--Hb_071654_010 Hb_004586_310 Hb_004586_310 Hb_005686_100--Hb_004586_310 Hb_005694_070 Hb_005694_070 Hb_005686_100--Hb_005694_070 Hb_002307_040 Hb_002307_040 Hb_005686_100--Hb_002307_040 Hb_000069_250 Hb_000069_250 Hb_005686_100--Hb_000069_250 Hb_114292_010 Hb_114292_010 Hb_005686_100--Hb_114292_010 Hb_003762_010 Hb_003762_010 Hb_005686_100--Hb_003762_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.03963 32.4602 91.774 9.92709 2.42344 1.04186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.14428 0

CAGE analysis