Hb_000787_010

Information

Type -
Description -
Location Contig787: 4851-7816
Sequence    

Annotation

kegg
ID pop:POPTR_0001s44620g
description hypothetical protein
nr
ID XP_012070765.1
description PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
swissprot
ID P25269
description Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2
trembl
ID A0A067L4R5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00836 PE=3 SV=1
Gene Ontology
ID GO:0004834
description tryptophan synthase beta chain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000787_010 0.0 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
2 Hb_099990_030 0.1726726235 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
3 Hb_004021_090 0.1753762078 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
4 Hb_003768_060 0.1910981813 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
5 Hb_028639_040 0.2180662495 - - PREDICTED: uncharacterized protein LOC105761689 [Gossypium raimondii]
6 Hb_000589_370 0.2392188611 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
7 Hb_002235_180 0.2464325039 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
8 Hb_003292_060 0.2511100224 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
9 Hb_004968_010 0.2547130678 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
10 Hb_122259_010 0.2579418646 - - -
11 Hb_004117_250 0.2596381959 - - PREDICTED: expansin-A8-like [Populus euphratica]
12 Hb_001004_050 0.2635726841 - - PREDICTED: uncharacterized protein LOC103335231 [Prunus mume]
13 Hb_002447_160 0.2639185925 - - -
14 Hb_001486_210 0.2672716945 - - -
15 Hb_004524_060 0.2742415597 - - hypothetical protein VITISV_039334 [Vitis vinifera]
16 Hb_002234_230 0.2785826512 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
17 Hb_158384_010 0.2858961823 - - poly(A) polymerase, putative [Ricinus communis]
18 Hb_009979_010 0.2859867479 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_114250_010 0.2930576952 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004524_070 0.2947226828 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]

Gene co-expression network

sample Hb_000787_010 Hb_000787_010 Hb_099990_030 Hb_099990_030 Hb_000787_010--Hb_099990_030 Hb_004021_090 Hb_004021_090 Hb_000787_010--Hb_004021_090 Hb_003768_060 Hb_003768_060 Hb_000787_010--Hb_003768_060 Hb_028639_040 Hb_028639_040 Hb_000787_010--Hb_028639_040 Hb_000589_370 Hb_000589_370 Hb_000787_010--Hb_000589_370 Hb_002235_180 Hb_002235_180 Hb_000787_010--Hb_002235_180 Hb_004968_010 Hb_004968_010 Hb_099990_030--Hb_004968_010 Hb_004524_070 Hb_004524_070 Hb_099990_030--Hb_004524_070 Hb_167508_010 Hb_167508_010 Hb_099990_030--Hb_167508_010 Hb_061466_020 Hb_061466_020 Hb_099990_030--Hb_061466_020 Hb_161023_010 Hb_161023_010 Hb_099990_030--Hb_161023_010 Hb_009979_010 Hb_009979_010 Hb_004021_090--Hb_009979_010 Hb_001486_210 Hb_001486_210 Hb_004021_090--Hb_001486_210 Hb_004021_090--Hb_028639_040 Hb_183192_010 Hb_183192_010 Hb_004021_090--Hb_183192_010 Hb_115513_030 Hb_115513_030 Hb_004021_090--Hb_115513_030 Hb_002447_160 Hb_002447_160 Hb_003768_060--Hb_002447_160 Hb_003768_060--Hb_028639_040 Hb_158384_010 Hb_158384_010 Hb_003768_060--Hb_158384_010 Hb_003768_060--Hb_004021_090 Hb_003768_060--Hb_099990_030 Hb_123475_020 Hb_123475_020 Hb_028639_040--Hb_123475_020 Hb_001762_050 Hb_001762_050 Hb_028639_040--Hb_001762_050 Hb_002874_210 Hb_002874_210 Hb_028639_040--Hb_002874_210 Hb_003292_060 Hb_003292_060 Hb_000589_370--Hb_003292_060 Hb_002234_230 Hb_002234_230 Hb_000589_370--Hb_002234_230 Hb_004117_250 Hb_004117_250 Hb_000589_370--Hb_004117_250 Hb_004524_060 Hb_004524_060 Hb_000589_370--Hb_004524_060 Hb_021650_050 Hb_021650_050 Hb_000589_370--Hb_021650_050 Hb_000589_370--Hb_004524_070 Hb_002235_180--Hb_004968_010 Hb_000803_250 Hb_000803_250 Hb_002235_180--Hb_000803_250 Hb_002235_180--Hb_099990_030 Hb_000661_280 Hb_000661_280 Hb_002235_180--Hb_000661_280 Hb_001004_050 Hb_001004_050 Hb_002235_180--Hb_001004_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.374307 0.387454 0.494863 0.138864 0.0119122 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis