Hb_002234_230

Information

Type -
Description -
Location Contig2234: 175523-177958
Sequence    

Annotation

kegg
ID rcu:RCOM_1496680
description hypothetical protein
nr
ID KDP22310.1
description hypothetical protein JCGZ_26141 [Jatropha curcas]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID A0A067JQN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26141 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002234_230 0.0 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
2 Hb_003292_060 0.1254071465 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
3 Hb_000589_370 0.1265031913 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
4 Hb_001124_030 0.2344251134 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
5 Hb_021650_050 0.2565172154 - - hypothetical protein RCOM_0852210 [Ricinus communis]
6 Hb_004117_250 0.2603351588 - - PREDICTED: expansin-A8-like [Populus euphratica]
7 Hb_004524_070 0.2658491156 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
8 Hb_099990_030 0.2715433357 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
9 Hb_004524_060 0.2771867602 - - hypothetical protein VITISV_039334 [Vitis vinifera]
10 Hb_000787_010 0.2785826512 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
11 Hb_003768_060 0.3000373627 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
12 Hb_004968_010 0.3095783714 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
13 Hb_014720_060 0.3202092651 - - hypothetical protein JCGZ_11469 [Jatropha curcas]
14 Hb_000441_010 0.3202140785 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
15 Hb_002545_030 0.3202857898 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_131101_010 0.3204505605 - - -
17 Hb_001761_110 0.3206398072 - - Contains similarity to Cf-2.2 gene gb
18 Hb_000964_160 0.3235540892 - - PREDICTED: uncharacterized protein LOC102617979 isoform X2 [Citrus sinensis]
19 Hb_007245_010 0.324036194 - - PREDICTED: uncharacterized protein LOC104783698 [Camelina sativa]
20 Hb_043295_010 0.3240508666 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_002234_230 Hb_002234_230 Hb_003292_060 Hb_003292_060 Hb_002234_230--Hb_003292_060 Hb_000589_370 Hb_000589_370 Hb_002234_230--Hb_000589_370 Hb_001124_030 Hb_001124_030 Hb_002234_230--Hb_001124_030 Hb_021650_050 Hb_021650_050 Hb_002234_230--Hb_021650_050 Hb_004117_250 Hb_004117_250 Hb_002234_230--Hb_004117_250 Hb_004524_070 Hb_004524_070 Hb_002234_230--Hb_004524_070 Hb_003292_060--Hb_000589_370 Hb_003292_060--Hb_001124_030 Hb_003292_060--Hb_004117_250 Hb_004524_060 Hb_004524_060 Hb_003292_060--Hb_004524_060 Hb_000787_010 Hb_000787_010 Hb_003292_060--Hb_000787_010 Hb_000589_370--Hb_004117_250 Hb_000589_370--Hb_004524_060 Hb_000589_370--Hb_021650_050 Hb_000589_370--Hb_004524_070 Hb_009302_010 Hb_009302_010 Hb_001124_030--Hb_009302_010 Hb_001124_030--Hb_000589_370 Hb_004968_010 Hb_004968_010 Hb_001124_030--Hb_004968_010 Hb_001124_030--Hb_004117_250 Hb_075351_010 Hb_075351_010 Hb_021650_050--Hb_075351_010 Hb_021650_050--Hb_004524_060 Hb_021650_050--Hb_004117_250 Hb_021650_050--Hb_003292_060 Hb_004117_250--Hb_004524_060 Hb_002897_020 Hb_002897_020 Hb_004117_250--Hb_002897_020 Hb_004117_250--Hb_000787_010 Hb_049884_010 Hb_049884_010 Hb_004117_250--Hb_049884_010 Hb_099990_030 Hb_099990_030 Hb_004524_070--Hb_099990_030 Hb_113823_010 Hb_113823_010 Hb_004524_070--Hb_113823_010 Hb_167508_010 Hb_167508_010 Hb_004524_070--Hb_167508_010 Hb_004524_070--Hb_003292_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0448024 0.0186753 0.0345257 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis