Hb_001124_030

Information

Type -
Description -
Location Contig1124: 78151-78489
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa023969mg
description hypothetical protein
nr
ID XP_007199337.1
description hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M5VIG0
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa023969mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description kinesin-4 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_030 0.0 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
2 Hb_003292_060 0.1442040319 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
3 Hb_002234_230 0.2344251134 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
4 Hb_009302_010 0.2399179949 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_000589_370 0.2433850626 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
6 Hb_004968_010 0.254049674 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
7 Hb_004117_250 0.2845623799 - - PREDICTED: expansin-A8-like [Populus euphratica]
8 Hb_000894_050 0.2939532969 - - -
9 Hb_096257_010 0.2939770106 - - -
10 Hb_180003_010 0.2944109941 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
11 Hb_030449_010 0.2944788849 - - -
12 Hb_021470_010 0.2949500536 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_004409_010 0.295316961 - - -
14 Hb_141990_060 0.2955537142 - - -
15 Hb_003206_040 0.2956475787 - - Auxin efflux carrier component, putative [Ricinus communis]
16 Hb_007586_010 0.2966880527 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
17 Hb_123056_010 0.3053471604 - - -
18 Hb_099990_030 0.3082908064 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
19 Hb_001703_100 0.315605439 - - PREDICTED: uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris]
20 Hb_002235_180 0.3179744842 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]

Gene co-expression network

sample Hb_001124_030 Hb_001124_030 Hb_003292_060 Hb_003292_060 Hb_001124_030--Hb_003292_060 Hb_002234_230 Hb_002234_230 Hb_001124_030--Hb_002234_230 Hb_009302_010 Hb_009302_010 Hb_001124_030--Hb_009302_010 Hb_000589_370 Hb_000589_370 Hb_001124_030--Hb_000589_370 Hb_004968_010 Hb_004968_010 Hb_001124_030--Hb_004968_010 Hb_004117_250 Hb_004117_250 Hb_001124_030--Hb_004117_250 Hb_003292_060--Hb_000589_370 Hb_003292_060--Hb_002234_230 Hb_003292_060--Hb_004117_250 Hb_004524_060 Hb_004524_060 Hb_003292_060--Hb_004524_060 Hb_000787_010 Hb_000787_010 Hb_003292_060--Hb_000787_010 Hb_002234_230--Hb_000589_370 Hb_021650_050 Hb_021650_050 Hb_002234_230--Hb_021650_050 Hb_002234_230--Hb_004117_250 Hb_004524_070 Hb_004524_070 Hb_002234_230--Hb_004524_070 Hb_004607_130 Hb_004607_130 Hb_009302_010--Hb_004607_130 Hb_011942_030 Hb_011942_030 Hb_009302_010--Hb_011942_030 Hb_009302_010--Hb_004117_250 Hb_023024_010 Hb_023024_010 Hb_009302_010--Hb_023024_010 Hb_010531_060 Hb_010531_060 Hb_009302_010--Hb_010531_060 Hb_000589_370--Hb_004117_250 Hb_000589_370--Hb_004524_060 Hb_000589_370--Hb_021650_050 Hb_000589_370--Hb_004524_070 Hb_099990_030 Hb_099990_030 Hb_004968_010--Hb_099990_030 Hb_002235_180 Hb_002235_180 Hb_004968_010--Hb_002235_180 Hb_004968_010--Hb_000787_010 Hb_004968_010--Hb_003292_060 Hb_000663_030 Hb_000663_030 Hb_004968_010--Hb_000663_030 Hb_004117_250--Hb_004524_060 Hb_002897_020 Hb_002897_020 Hb_004117_250--Hb_002897_020 Hb_004117_250--Hb_000787_010 Hb_049884_010 Hb_049884_010 Hb_004117_250--Hb_049884_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.274464 0.258488 0.103247 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis