Hb_004607_130

Information

Type -
Description -
Location Contig4607: 77418-77630
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43719: 77321-77704
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004607_130 0.0 - - -
2 Hb_009302_010 0.1873588079 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_000878_150 0.2465914338 - - Gibberellin receptor GID1, putative [Ricinus communis]
4 Hb_051450_010 0.2467509797 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000890_190 0.2603939911 - - glutaredoxin, grx, putative [Ricinus communis]
6 Hb_168039_020 0.2632917987 - - -
7 Hb_003683_090 0.2638465023 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
8 Hb_000473_010 0.2643921329 - - PREDICTED: galactolipase DONGLE, chloroplastic [Jatropha curcas]
9 Hb_002290_100 0.2655442163 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
10 Hb_000510_350 0.2676479179 - - Putative polyprotein [Oryza sativa Japonica Group]
11 Hb_000699_200 0.2691911132 - - hypothetical protein POPTR_0019s02340g [Populus trichocarpa]
12 Hb_002193_050 0.2721604772 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
13 Hb_012760_180 0.2763554974 - - Basic-leucine zipper transcription factor family protein, putative [Theobroma cacao]
14 Hb_082219_010 0.2812570808 - - Os03g0264300, partial [Oryza sativa Japonica Group]
15 Hb_031862_260 0.2823271306 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004570_040 0.2850769561 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_025030_010 0.292514727 - - -
18 Hb_023024_010 0.2934181692 - - PREDICTED: uncharacterized protein LOC105767094 [Gossypium raimondii]
19 Hb_005643_020 0.2940085935 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
20 Hb_000270_850 0.294557102 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004607_130 Hb_004607_130 Hb_009302_010 Hb_009302_010 Hb_004607_130--Hb_009302_010 Hb_000878_150 Hb_000878_150 Hb_004607_130--Hb_000878_150 Hb_051450_010 Hb_051450_010 Hb_004607_130--Hb_051450_010 Hb_000890_190 Hb_000890_190 Hb_004607_130--Hb_000890_190 Hb_168039_020 Hb_168039_020 Hb_004607_130--Hb_168039_020 Hb_003683_090 Hb_003683_090 Hb_004607_130--Hb_003683_090 Hb_001124_030 Hb_001124_030 Hb_009302_010--Hb_001124_030 Hb_011942_030 Hb_011942_030 Hb_009302_010--Hb_011942_030 Hb_004117_250 Hb_004117_250 Hb_009302_010--Hb_004117_250 Hb_023024_010 Hb_023024_010 Hb_009302_010--Hb_023024_010 Hb_010531_060 Hb_010531_060 Hb_009302_010--Hb_010531_060 Hb_000523_060 Hb_000523_060 Hb_000878_150--Hb_000523_060 Hb_002787_100 Hb_002787_100 Hb_000878_150--Hb_002787_100 Hb_000291_020 Hb_000291_020 Hb_000878_150--Hb_000291_020 Hb_124207_010 Hb_124207_010 Hb_000878_150--Hb_124207_010 Hb_000510_350 Hb_000510_350 Hb_000878_150--Hb_000510_350 Hb_002481_070 Hb_002481_070 Hb_000878_150--Hb_002481_070 Hb_025030_010 Hb_025030_010 Hb_051450_010--Hb_025030_010 Hb_051450_010--Hb_168039_020 Hb_051450_010--Hb_000510_350 Hb_000389_250 Hb_000389_250 Hb_051450_010--Hb_000389_250 Hb_051450_010--Hb_000890_190 Hb_002193_050 Hb_002193_050 Hb_051450_010--Hb_002193_050 Hb_000890_190--Hb_003683_090 Hb_000890_190--Hb_000510_350 Hb_000699_200 Hb_000699_200 Hb_000890_190--Hb_000699_200 Hb_000473_010 Hb_000473_010 Hb_000890_190--Hb_000473_010 Hb_000890_190--Hb_168039_020 Hb_000890_190--Hb_002193_050 Hb_168039_020--Hb_000510_350 Hb_002290_100 Hb_002290_100 Hb_168039_020--Hb_002290_100 Hb_168039_020--Hb_003683_090 Hb_175087_010 Hb_175087_010 Hb_168039_020--Hb_175087_010 Hb_003683_090--Hb_000699_200 Hb_003683_090--Hb_000473_010 Hb_006124_040 Hb_006124_040 Hb_003683_090--Hb_006124_040 Hb_003683_090--Hb_002193_050 Hb_003683_090--Hb_000510_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.02667 5.98862 0.813323 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.41934 0

CAGE analysis