Hb_011942_030

Information

Type -
Description -
Location Contig11942: 14341-18825
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05738: 15624-15925 , PASA_asmbl_05739: 12796-16002 , PASA_asmbl_05740: 14498-14645
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011942_030 0.0 - - -
2 Hb_002897_020 0.1759565266 - - phosphate transporter [Manihot esculenta]
3 Hb_039385_010 0.2147109104 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_011903_030 0.2147272466 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Populus euphratica]
5 Hb_000742_050 0.2147282534 - - hypothetical protein CL1373Contig1_03, partial [Pinus lambertiana]
6 Hb_000629_050 0.2147597974 - - -
7 Hb_005417_020 0.2147760399 - - -
8 Hb_129319_010 0.2147806748 - - PREDICTED: uncharacterized protein LOC104115096 [Nicotiana tomentosiformis]
9 Hb_005171_030 0.2147859157 - - hypothetical protein EUGRSUZ_H02434 [Eucalyptus grandis]
10 Hb_025248_030 0.2152452289 - - hypothetical protein JCGZ_09377 [Jatropha curcas]
11 Hb_002232_330 0.2153659717 - - -
12 Hb_000522_100 0.2153819619 - - PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Nelumbo nucifera]
13 Hb_001198_070 0.2157643242 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004712_100 0.216322551 - - hypothetical protein CICLE_v10003434mg, partial [Citrus clementina]
15 Hb_049884_010 0.2171069023 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_048635_010 0.2180174447 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_011671_300 0.2183759539 - - 14.3 kDa oleosin [Jatropha curcas]
18 Hb_002192_060 0.2183977034 - - -
19 Hb_000120_140 0.2185470722 - - hypothetical protein POPTR_0009s05160g [Populus trichocarpa]
20 Hb_000264_200 0.2185965263 - - PREDICTED: tetraspanin-19-like [Jatropha curcas]

Gene co-expression network

sample Hb_011942_030 Hb_011942_030 Hb_002897_020 Hb_002897_020 Hb_011942_030--Hb_002897_020 Hb_039385_010 Hb_039385_010 Hb_011942_030--Hb_039385_010 Hb_011903_030 Hb_011903_030 Hb_011942_030--Hb_011903_030 Hb_000742_050 Hb_000742_050 Hb_011942_030--Hb_000742_050 Hb_000629_050 Hb_000629_050 Hb_011942_030--Hb_000629_050 Hb_005417_020 Hb_005417_020 Hb_011942_030--Hb_005417_020 Hb_115513_030 Hb_115513_030 Hb_002897_020--Hb_115513_030 Hb_000836_180 Hb_000836_180 Hb_002897_020--Hb_000836_180 Hb_000433_050 Hb_000433_050 Hb_002897_020--Hb_000433_050 Hb_104641_010 Hb_104641_010 Hb_002897_020--Hb_104641_010 Hb_179363_010 Hb_179363_010 Hb_002897_020--Hb_179363_010 Hb_039385_010--Hb_011903_030 Hb_039385_010--Hb_000742_050 Hb_039385_010--Hb_000629_050 Hb_039385_010--Hb_005417_020 Hb_129319_010 Hb_129319_010 Hb_039385_010--Hb_129319_010 Hb_005171_030 Hb_005171_030 Hb_039385_010--Hb_005171_030 Hb_011903_030--Hb_000629_050 Hb_011903_030--Hb_005417_020 Hb_011903_030--Hb_129319_010 Hb_011903_030--Hb_005171_030 Hb_011903_030--Hb_000742_050 Hb_000742_050--Hb_000629_050 Hb_000742_050--Hb_005417_020 Hb_000742_050--Hb_129319_010 Hb_000742_050--Hb_005171_030 Hb_000629_050--Hb_005417_020 Hb_000629_050--Hb_129319_010 Hb_000629_050--Hb_005171_030 Hb_005417_020--Hb_129319_010 Hb_005417_020--Hb_005171_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0586756 0.684654 0.335151 0 0 0.0411956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis