Hb_115513_030

Information

Type -
Description -
Location Contig115513: 18210-19539
Sequence    

Annotation

kegg
ID rcu:RCOM_0607550
description hypothetical protein
nr
ID XP_012089477.1
description PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
swissprot
ID O22969
description Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1
trembl
ID A0A067JVY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23517 PE=4 SV=1
Gene Ontology
ID GO:0003676
description alba dna rna-binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115513_030 0.0 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
2 Hb_114250_010 0.1605290941 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002897_020 0.1692340669 - - phosphate transporter [Manihot esculenta]
4 Hb_114674_010 0.1947649586 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
5 Hb_000819_020 0.2027927055 - - hypothetical protein PRUPE_ppa020290mg, partial [Prunus persica]
6 Hb_008203_020 0.2046361945 - - protein kinase, putative [Ricinus communis]
7 Hb_000836_180 0.2051275557 - - ferric reductase oxidase [Manihot esculenta]
8 Hb_000819_040 0.2116877452 - - ATP binding protein, putative [Ricinus communis]
9 Hb_029689_010 0.2182738907 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_183192_010 0.2197024408 - - PREDICTED: thioredoxin reductase NTRC [Sesamum indicum]
11 Hb_009979_010 0.2215503967 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
12 Hb_004021_090 0.2226356096 - - hypothetical protein JCGZ_09233 [Jatropha curcas]
13 Hb_012264_010 0.2247129841 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_000926_110 0.2254017269 - - Mitogen-activated protein kinase kinase kinase, putative [Ricinus communis]
15 Hb_010477_020 0.2283296983 - - hypothetical protein JCGZ_23768 [Jatropha curcas]
16 Hb_007188_060 0.230433751 - - -
17 Hb_011942_030 0.2395694068 - - -
18 Hb_001486_210 0.2413619849 - - -
19 Hb_000284_180 0.2417001043 - - hypothetical protein EUGRSUZ_B01865 [Eucalyptus grandis]
20 Hb_000755_040 0.2432796297 - - early-responsive to dehydration family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_115513_030 Hb_115513_030 Hb_114250_010 Hb_114250_010 Hb_115513_030--Hb_114250_010 Hb_002897_020 Hb_002897_020 Hb_115513_030--Hb_002897_020 Hb_114674_010 Hb_114674_010 Hb_115513_030--Hb_114674_010 Hb_000819_020 Hb_000819_020 Hb_115513_030--Hb_000819_020 Hb_008203_020 Hb_008203_020 Hb_115513_030--Hb_008203_020 Hb_000836_180 Hb_000836_180 Hb_115513_030--Hb_000836_180 Hb_114250_010--Hb_114674_010 Hb_114250_010--Hb_008203_020 Hb_049884_010 Hb_049884_010 Hb_114250_010--Hb_049884_010 Hb_015928_020 Hb_015928_020 Hb_114250_010--Hb_015928_020 Hb_029689_010 Hb_029689_010 Hb_114250_010--Hb_029689_010 Hb_011942_030 Hb_011942_030 Hb_002897_020--Hb_011942_030 Hb_002897_020--Hb_000836_180 Hb_000433_050 Hb_000433_050 Hb_002897_020--Hb_000433_050 Hb_104641_010 Hb_104641_010 Hb_002897_020--Hb_104641_010 Hb_179363_010 Hb_179363_010 Hb_002897_020--Hb_179363_010 Hb_114674_010--Hb_008203_020 Hb_095575_010 Hb_095575_010 Hb_114674_010--Hb_095575_010 Hb_114674_010--Hb_029689_010 Hb_181824_010 Hb_181824_010 Hb_114674_010--Hb_181824_010 Hb_164577_010 Hb_164577_010 Hb_000819_020--Hb_164577_010 Hb_008637_020 Hb_008637_020 Hb_000819_020--Hb_008637_020 Hb_002289_180 Hb_002289_180 Hb_000819_020--Hb_002289_180 Hb_000164_160 Hb_000164_160 Hb_000819_020--Hb_000164_160 Hb_099188_010 Hb_099188_010 Hb_000819_020--Hb_099188_010 Hb_000997_130 Hb_000997_130 Hb_000819_020--Hb_000997_130 Hb_074184_010 Hb_074184_010 Hb_008203_020--Hb_074184_010 Hb_007951_120 Hb_007951_120 Hb_008203_020--Hb_007951_120 Hb_007188_060 Hb_007188_060 Hb_008203_020--Hb_007188_060 Hb_008203_020--Hb_015928_020 Hb_112703_010 Hb_112703_010 Hb_000836_180--Hb_112703_010 Hb_000836_180--Hb_179363_010 Hb_008651_010 Hb_008651_010 Hb_000836_180--Hb_008651_010 Hb_000836_180--Hb_002289_180 Hb_000836_180--Hb_000819_020 Hb_032071_010 Hb_032071_010 Hb_000836_180--Hb_032071_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0768978 0.540327 0.369496 0.110259 0 0.0697832
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis