Hb_015928_020

Information

Type -
Description -
Location Contig15928: 5278-6711
Sequence    

Annotation

kegg
ID vvi:104878334
description pentatricopeptide repeat-containing protein At5g66520-like
nr
ID XP_012074042.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
swissprot
ID Q683I9
description Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1
trembl
ID A0A067KJT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08656 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015928_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
2 Hb_014361_050 0.1454558827 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
3 Hb_061466_020 0.1632067864 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
4 Hb_000997_010 0.1879387789 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
5 Hb_008203_020 0.213455538 - - protein kinase, putative [Ricinus communis]
6 Hb_074184_010 0.2169441627 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
7 Hb_006286_010 0.2296957326 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
8 Hb_009189_040 0.2402830758 - - PREDICTED: uncharacterized protein LOC104446949 [Eucalyptus grandis]
9 Hb_114250_010 0.246185273 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002196_010 0.2527924268 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
11 Hb_001622_010 0.2550315539 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_005464_030 0.2556007347 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_002326_070 0.2560662701 - - ent-kaurene oxidase, chloroplastic [Jatropha curcas]
14 Hb_005517_010 0.2618130644 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
15 Hb_000936_040 0.2620121522 - - hypothetical protein JCGZ_00046 [Jatropha curcas]
16 Hb_027402_040 0.26358841 - - Thioredoxin II, putative [Ricinus communis]
17 Hb_009476_150 0.2659600341 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
18 Hb_000834_240 0.2697811744 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
19 Hb_005548_030 0.2704415792 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
20 Hb_114674_010 0.2768925153 - - hypothetical protein JCGZ_26658 [Jatropha curcas]

Gene co-expression network

sample Hb_015928_020 Hb_015928_020 Hb_014361_050 Hb_014361_050 Hb_015928_020--Hb_014361_050 Hb_061466_020 Hb_061466_020 Hb_015928_020--Hb_061466_020 Hb_000997_010 Hb_000997_010 Hb_015928_020--Hb_000997_010 Hb_008203_020 Hb_008203_020 Hb_015928_020--Hb_008203_020 Hb_074184_010 Hb_074184_010 Hb_015928_020--Hb_074184_010 Hb_006286_010 Hb_006286_010 Hb_015928_020--Hb_006286_010 Hb_014361_050--Hb_000997_010 Hb_014361_050--Hb_061466_020 Hb_076233_020 Hb_076233_020 Hb_014361_050--Hb_076233_020 Hb_014361_050--Hb_006286_010 Hb_055339_010 Hb_055339_010 Hb_014361_050--Hb_055339_010 Hb_061466_020--Hb_000997_010 Hb_167508_010 Hb_167508_010 Hb_061466_020--Hb_167508_010 Hb_129459_010 Hb_129459_010 Hb_061466_020--Hb_129459_010 Hb_005517_010 Hb_005517_010 Hb_061466_020--Hb_005517_010 Hb_000997_010--Hb_076233_020 Hb_000997_010--Hb_055339_010 Hb_004570_050 Hb_004570_050 Hb_000997_010--Hb_004570_050 Hb_008203_020--Hb_074184_010 Hb_114674_010 Hb_114674_010 Hb_008203_020--Hb_114674_010 Hb_007951_120 Hb_007951_120 Hb_008203_020--Hb_007951_120 Hb_115513_030 Hb_115513_030 Hb_008203_020--Hb_115513_030 Hb_007188_060 Hb_007188_060 Hb_008203_020--Hb_007188_060 Hb_029689_010 Hb_029689_010 Hb_074184_010--Hb_029689_010 Hb_065755_020 Hb_065755_020 Hb_074184_010--Hb_065755_020 Hb_032202_050 Hb_032202_050 Hb_074184_010--Hb_032202_050 Hb_000221_230 Hb_000221_230 Hb_074184_010--Hb_000221_230 Hb_004495_010 Hb_004495_010 Hb_074184_010--Hb_004495_010 Hb_009476_150 Hb_009476_150 Hb_006286_010--Hb_009476_150 Hb_102437_010 Hb_102437_010 Hb_006286_010--Hb_102437_010 Hb_002196_010 Hb_002196_010 Hb_006286_010--Hb_002196_010 Hb_006286_010--Hb_000997_010 Hb_000438_150 Hb_000438_150 Hb_006286_010--Hb_000438_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178593 0.391353 0.188691 0.131636 0.109009 0.0786444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis