Hb_000997_010

Information

Type -
Description -
Location Contig997: 19681-20697
Sequence    

Annotation

kegg
ID pop:POPTR_0010s08570g
description POPTRDRAFT_566125; forkhead-associated domain-containing family protein
nr
ID XP_012069787.1
description PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L884
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02287 PE=4 SV=1
Gene Ontology
ID GO:0005515
description fha domain-containing protein at4g14490-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000997_010 0.0 - - PREDICTED: FHA domain-containing protein At4g14490 isoform X2 [Jatropha curcas]
2 Hb_014361_050 0.0693665987 - - PREDICTED: uncharacterized protein ycf36 isoform X1 [Jatropha curcas]
3 Hb_061466_020 0.1687710605 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
4 Hb_076233_020 0.1720406071 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
5 Hb_055339_010 0.1793060946 - - EARLY-RESPONSIVE TO DEHYDRATION 7 family protein [Populus trichocarpa]
6 Hb_015928_020 0.1879387789 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
7 Hb_004570_050 0.1975958207 - - kinase, putative [Ricinus communis]
8 Hb_005517_010 0.2028811516 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
9 Hb_006286_010 0.2085213735 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
10 Hb_182249_010 0.2288686509 - - -
11 Hb_000258_360 0.230586214 - - PREDICTED: uncharacterized protein LOC104455487 [Eucalyptus grandis]
12 Hb_005155_020 0.2421942754 - - -
13 Hb_004052_160 0.2478551298 - - Chain A, Rna Binding Protein
14 Hb_057247_010 0.2493171187 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
15 Hb_129459_010 0.2542499273 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
16 Hb_036693_010 0.263402696 - - -
17 Hb_006816_340 0.2635692291 - - -
18 Hb_004994_130 0.2641608143 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
19 Hb_074184_010 0.2650529497 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
20 Hb_008203_020 0.2673187448 - - protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000997_010 Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_000997_010--Hb_014361_050 Hb_061466_020 Hb_061466_020 Hb_000997_010--Hb_061466_020 Hb_076233_020 Hb_076233_020 Hb_000997_010--Hb_076233_020 Hb_055339_010 Hb_055339_010 Hb_000997_010--Hb_055339_010 Hb_015928_020 Hb_015928_020 Hb_000997_010--Hb_015928_020 Hb_004570_050 Hb_004570_050 Hb_000997_010--Hb_004570_050 Hb_014361_050--Hb_015928_020 Hb_014361_050--Hb_061466_020 Hb_014361_050--Hb_076233_020 Hb_006286_010 Hb_006286_010 Hb_014361_050--Hb_006286_010 Hb_014361_050--Hb_055339_010 Hb_061466_020--Hb_015928_020 Hb_167508_010 Hb_167508_010 Hb_061466_020--Hb_167508_010 Hb_129459_010 Hb_129459_010 Hb_061466_020--Hb_129459_010 Hb_005517_010 Hb_005517_010 Hb_061466_020--Hb_005517_010 Hb_076233_020--Hb_055339_010 Hb_076233_020--Hb_004570_050 Hb_057247_010 Hb_057247_010 Hb_076233_020--Hb_057247_010 Hb_169329_010 Hb_169329_010 Hb_076233_020--Hb_169329_010 Hb_055339_010--Hb_004570_050 Hb_036693_010 Hb_036693_010 Hb_055339_010--Hb_036693_010 Hb_007188_060 Hb_007188_060 Hb_055339_010--Hb_007188_060 Hb_008203_020 Hb_008203_020 Hb_015928_020--Hb_008203_020 Hb_074184_010 Hb_074184_010 Hb_015928_020--Hb_074184_010 Hb_015928_020--Hb_006286_010 Hb_170532_010 Hb_170532_010 Hb_004570_050--Hb_170532_010 Hb_124961_010 Hb_124961_010 Hb_004570_050--Hb_124961_010 Hb_006816_340 Hb_006816_340 Hb_004570_050--Hb_006816_340 Hb_182249_010 Hb_182249_010 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180 Hb_005155_020 Hb_005155_020 Hb_004570_050--Hb_005155_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.742322 1.08167 1.11878 0.811832 0.51356 0.924555
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis