Hb_006816_340

Information

Type -
Description -
Location Contig6816: 212281-212663
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53829: 213035-213253 , PASA_asmbl_53830: 213350-217710
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_340 0.0 - - -
2 Hb_004570_050 0.1820150325 - - kinase, putative [Ricinus communis]
3 Hb_124961_010 0.1935069124 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
4 Hb_170532_010 0.1956683551 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
5 Hb_007136_020 0.1991100719 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
6 Hb_003895_030 0.2185136961 - - -
7 Hb_171619_010 0.2195010532 - - protein binding protein, putative [Ricinus communis]
8 Hb_000834_240 0.2219255452 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
9 Hb_116638_010 0.2267568464 - - conserved hypothetical protein [Ricinus communis]
10 Hb_057247_010 0.2346786681 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
11 Hb_128376_010 0.2357123059 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_076233_020 0.2395769756 transcription factor TF Family: C2H2 PREDICTED: dnaJ homolog subfamily C member 21 [Populus euphratica]
13 Hb_016006_010 0.2404570037 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_000928_150 0.2416677635 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000152_670 0.2445782649 - - hypothetical protein VITISV_037603 [Vitis vinifera]
16 Hb_002370_040 0.2454252402 - - PREDICTED: uncharacterized protein LOC105644336 [Jatropha curcas]
17 Hb_005155_020 0.2467407708 - - -
18 Hb_001916_060 0.2470723761 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
19 Hb_101020_010 0.2493001756 - - -
20 Hb_169329_010 0.2499897577 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006816_340 Hb_006816_340 Hb_004570_050 Hb_004570_050 Hb_006816_340--Hb_004570_050 Hb_124961_010 Hb_124961_010 Hb_006816_340--Hb_124961_010 Hb_170532_010 Hb_170532_010 Hb_006816_340--Hb_170532_010 Hb_007136_020 Hb_007136_020 Hb_006816_340--Hb_007136_020 Hb_003895_030 Hb_003895_030 Hb_006816_340--Hb_003895_030 Hb_171619_010 Hb_171619_010 Hb_006816_340--Hb_171619_010 Hb_004570_050--Hb_170532_010 Hb_004570_050--Hb_124961_010 Hb_182249_010 Hb_182249_010 Hb_004570_050--Hb_182249_010 Hb_000179_180 Hb_000179_180 Hb_004570_050--Hb_000179_180 Hb_005155_020 Hb_005155_020 Hb_004570_050--Hb_005155_020 Hb_124961_010--Hb_170532_010 Hb_124961_010--Hb_171619_010 Hb_000160_150 Hb_000160_150 Hb_124961_010--Hb_000160_150 Hb_124961_010--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_124961_010--Hb_101020_010 Hb_170532_010--Hb_171619_010 Hb_170532_010--Hb_000160_150 Hb_002783_010 Hb_002783_010 Hb_170532_010--Hb_002783_010 Hb_078568_010 Hb_078568_010 Hb_170532_010--Hb_078568_010 Hb_003297_020 Hb_003297_020 Hb_007136_020--Hb_003297_020 Hb_007136_020--Hb_101020_010 Hb_007136_020--Hb_170532_010 Hb_070385_010 Hb_070385_010 Hb_007136_020--Hb_070385_010 Hb_002370_040 Hb_002370_040 Hb_003895_030--Hb_002370_040 Hb_100525_010 Hb_100525_010 Hb_003895_030--Hb_100525_010 Hb_007481_030 Hb_007481_030 Hb_003895_030--Hb_007481_030 Hb_002742_080 Hb_002742_080 Hb_003895_030--Hb_002742_080 Hb_004935_080 Hb_004935_080 Hb_003895_030--Hb_004935_080 Hb_002320_070 Hb_002320_070 Hb_003895_030--Hb_002320_070 Hb_171619_010--Hb_000160_150 Hb_171619_010--Hb_003297_020 Hb_171619_010--Hb_101020_010 Hb_006230_040 Hb_006230_040 Hb_171619_010--Hb_006230_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.39584 0.700239 0.528308 0.265764 0.417351 1.08766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.202936 0 0.089826 0

CAGE analysis