Hb_002783_010

Information

Type -
Description -
Location Contig2783: 7195-7926
Sequence    

Annotation

kegg
ID pop:POPTR_0002s02120g
description POPTRDRAFT_550861; hypothetical protein
nr
ID XP_012073766.1
description PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KKX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08192 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29025: 6851-8280
cDNA
(Sanger)
(ID:Location)		 051_K04.ab1: 7506-8280

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002783_010 0.0 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
2 Hb_118720_010 0.1280086553 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
3 Hb_002742_080 0.14208444 - - unknown [Populus trichocarpa]
4 Hb_015354_010 0.1492588289 - - PREDICTED: B2 protein [Jatropha curcas]
5 Hb_000152_670 0.1524751978 - - hypothetical protein VITISV_037603 [Vitis vinifera]
6 Hb_001052_040 0.1537148318 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
7 Hb_001865_040 0.1557659247 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_001218_050 0.1647615639 - - Ribosome-binding protein, putative [Ricinus communis]
9 Hb_170532_010 0.1655357485 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
10 Hb_000100_130 0.1659810797 - - hypothetical protein VITISV_026702 [Vitis vinifera]
11 Hb_000336_270 0.1673199014 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_001882_040 0.1679295764 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
13 Hb_003097_180 0.1696152463 - - PREDICTED: crossover junction endonuclease MUS81 [Jatropha curcas]
14 Hb_000742_210 0.1698915085 - - protein phosphatase 2c, putative [Ricinus communis]
15 Hb_128376_010 0.1712284974 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_035318_010 0.1755026994 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
17 Hb_172141_010 0.1781671128 - - PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]
18 Hb_116638_010 0.1802023846 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000997_410 0.1819726154 - - PREDICTED: uncharacterized protein LOC105632066 [Jatropha curcas]
20 Hb_080147_040 0.1825546607 - - hypothetical protein JCGZ_07266 [Jatropha curcas]

Gene co-expression network

sample Hb_002783_010 Hb_002783_010 Hb_118720_010 Hb_118720_010 Hb_002783_010--Hb_118720_010 Hb_002742_080 Hb_002742_080 Hb_002783_010--Hb_002742_080 Hb_015354_010 Hb_015354_010 Hb_002783_010--Hb_015354_010 Hb_000152_670 Hb_000152_670 Hb_002783_010--Hb_000152_670 Hb_001052_040 Hb_001052_040 Hb_002783_010--Hb_001052_040 Hb_001865_040 Hb_001865_040 Hb_002783_010--Hb_001865_040 Hb_000179_180 Hb_000179_180 Hb_118720_010--Hb_000179_180 Hb_118720_010--Hb_002742_080 Hb_116638_010 Hb_116638_010 Hb_118720_010--Hb_116638_010 Hb_000059_200 Hb_000059_200 Hb_118720_010--Hb_000059_200 Hb_001493_080 Hb_001493_080 Hb_118720_010--Hb_001493_080 Hb_002742_080--Hb_001052_040 Hb_005333_030 Hb_005333_030 Hb_002742_080--Hb_005333_030 Hb_003710_040 Hb_003710_040 Hb_002742_080--Hb_003710_040 Hb_000261_290 Hb_000261_290 Hb_002742_080--Hb_000261_290 Hb_128376_010 Hb_128376_010 Hb_002742_080--Hb_128376_010 Hb_002320_070 Hb_002320_070 Hb_002742_080--Hb_002320_070 Hb_015354_010--Hb_001052_040 Hb_003038_220 Hb_003038_220 Hb_015354_010--Hb_003038_220 Hb_173178_020 Hb_173178_020 Hb_015354_010--Hb_173178_020 Hb_015354_010--Hb_000152_670 Hb_142751_010 Hb_142751_010 Hb_015354_010--Hb_142751_010 Hb_015354_010--Hb_002742_080 Hb_000152_670--Hb_001052_040 Hb_000152_670--Hb_128376_010 Hb_000996_180 Hb_000996_180 Hb_000152_670--Hb_000996_180 Hb_004017_040 Hb_004017_040 Hb_000152_670--Hb_004017_040 Hb_009646_050 Hb_009646_050 Hb_000152_670--Hb_009646_050 Hb_000886_060 Hb_000886_060 Hb_001052_040--Hb_000886_060 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_001052_040--Hb_173178_020 Hb_001865_040--Hb_005333_030 Hb_000336_270 Hb_000336_270 Hb_001865_040--Hb_000336_270 Hb_001865_040--Hb_002742_080 Hb_001882_040 Hb_001882_040 Hb_001865_040--Hb_001882_040 Hb_002081_120 Hb_002081_120 Hb_001865_040--Hb_002081_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.904 102.375 70.8549 43.0562 38.9438 159.398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5782 11.781 13.9402 26.2534 11.2962

CAGE analysis