Hb_003038_220

Information

Type -
Description -
Location Contig3038: 124452-124986
Sequence    

Annotation

kegg
ID rcu:RCOM_0727700
description eukaryotic translation initiation factor 2 gamma subunit, putative
nr
ID XP_002523025.1
description eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAK6
description Eukaryotic translation initiation factor 2 gamma subunit, putative OS=Ricinus communis GN=RCOM_0727700 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic translation initiation factor 2 subunit gamma-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_220 0.0 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
2 Hb_015354_010 0.1192183916 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_012760_130 0.1445520965 - - PREDICTED: uncharacterized protein LOC105647093 [Jatropha curcas]
4 Hb_007123_060 0.1469253856 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
5 Hb_003925_070 0.1480597069 - - ATOZI1, putative [Ricinus communis]
6 Hb_004883_050 0.1494699959 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
7 Hb_004935_080 0.14988367 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
8 Hb_001052_040 0.1501133294 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
9 Hb_076874_010 0.1509019277 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
10 Hb_003992_040 0.1543109851 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
11 Hb_070469_010 0.1603937609 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
12 Hb_142751_010 0.1609443959 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001218_050 0.1640138352 - - Ribosome-binding protein, putative [Ricinus communis]
14 Hb_126295_010 0.1658397874 - - PREDICTED: protein SEH1 [Jatropha curcas]
15 Hb_002687_080 0.1663060361 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
16 Hb_001025_110 0.1671105477 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000991_070 0.1694325552 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
18 Hb_001829_040 0.1734616991 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
19 Hb_073973_160 0.1743274704 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
20 Hb_000025_050 0.1745515957 - - hypothetical protein POPTR_0003s13040g [Populus trichocarpa]

Gene co-expression network

sample Hb_003038_220 Hb_003038_220 Hb_015354_010 Hb_015354_010 Hb_003038_220--Hb_015354_010 Hb_012760_130 Hb_012760_130 Hb_003038_220--Hb_012760_130 Hb_007123_060 Hb_007123_060 Hb_003038_220--Hb_007123_060 Hb_003925_070 Hb_003925_070 Hb_003038_220--Hb_003925_070 Hb_004883_050 Hb_004883_050 Hb_003038_220--Hb_004883_050 Hb_004935_080 Hb_004935_080 Hb_003038_220--Hb_004935_080 Hb_001052_040 Hb_001052_040 Hb_015354_010--Hb_001052_040 Hb_173178_020 Hb_173178_020 Hb_015354_010--Hb_173178_020 Hb_000152_670 Hb_000152_670 Hb_015354_010--Hb_000152_670 Hb_142751_010 Hb_142751_010 Hb_015354_010--Hb_142751_010 Hb_002742_080 Hb_002742_080 Hb_015354_010--Hb_002742_080 Hb_012760_130--Hb_004883_050 Hb_000416_070 Hb_000416_070 Hb_012760_130--Hb_000416_070 Hb_012760_130--Hb_007123_060 Hb_005731_120 Hb_005731_120 Hb_012760_130--Hb_005731_120 Hb_001287_080 Hb_001287_080 Hb_012760_130--Hb_001287_080 Hb_003498_090 Hb_003498_090 Hb_012760_130--Hb_003498_090 Hb_007123_060--Hb_004883_050 Hb_001545_050 Hb_001545_050 Hb_007123_060--Hb_001545_050 Hb_000327_290 Hb_000327_290 Hb_007123_060--Hb_000327_290 Hb_184570_010 Hb_184570_010 Hb_007123_060--Hb_184570_010 Hb_012120_030 Hb_012120_030 Hb_007123_060--Hb_012120_030 Hb_076874_010 Hb_076874_010 Hb_003925_070--Hb_076874_010 Hb_000025_050 Hb_000025_050 Hb_003925_070--Hb_000025_050 Hb_106411_010 Hb_106411_010 Hb_003925_070--Hb_106411_010 Hb_004466_040 Hb_004466_040 Hb_003925_070--Hb_004466_040 Hb_086022_010 Hb_086022_010 Hb_003925_070--Hb_086022_010 Hb_070469_010 Hb_070469_010 Hb_003925_070--Hb_070469_010 Hb_001829_040 Hb_001829_040 Hb_004883_050--Hb_001829_040 Hb_001911_040 Hb_001911_040 Hb_004883_050--Hb_001911_040 Hb_133724_010 Hb_133724_010 Hb_004883_050--Hb_133724_010 Hb_059480_010 Hb_059480_010 Hb_004883_050--Hb_059480_010 Hb_004935_080--Hb_070469_010 Hb_002320_070 Hb_002320_070 Hb_004935_080--Hb_002320_070 Hb_000130_190 Hb_000130_190 Hb_004935_080--Hb_000130_190 Hb_013358_100 Hb_013358_100 Hb_004935_080--Hb_013358_100 Hb_009393_200 Hb_009393_200 Hb_004935_080--Hb_009393_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.41597 9.19171 4.65347 13.0555 6.77754 16.1624
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.12322 5.59051 0.873826 2.74464 1.42154

CAGE analysis