Hb_015354_010

Information

Type -
Description -
Location Contig15354: 2269-2909
Sequence    

Annotation

kegg
ID tcc:TCM_017191
description DCD domain protein isoform 1
nr
ID XP_012070379.1
description PREDICTED: B2 protein [Jatropha curcas]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067LCT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13205: 3597-3777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015354_010 0.0 - - PREDICTED: B2 protein [Jatropha curcas]
2 Hb_001052_040 0.075618885 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
3 Hb_003038_220 0.1192183916 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
4 Hb_173178_020 0.1268153578 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
5 Hb_000152_670 0.1304341663 - - hypothetical protein VITISV_037603 [Vitis vinifera]
6 Hb_142751_010 0.1313394181 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002742_080 0.1377439235 - - unknown [Populus trichocarpa]
8 Hb_170487_010 0.1397050076 - - -
9 Hb_019813_010 0.1403873792 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
10 Hb_001910_020 0.1434268776 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
11 Hb_073973_160 0.143995578 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
12 Hb_116638_010 0.1457432181 - - conserved hypothetical protein [Ricinus communis]
13 Hb_058381_010 0.1479358519 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
14 Hb_030328_010 0.1487587148 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
15 Hb_002783_010 0.1492588289 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
16 Hb_000939_060 0.1496968755 - - PREDICTED: DNA repair protein REV1 [Jatropha curcas]
17 Hb_172141_010 0.1508696572 - - PREDICTED: uncharacterized protein LOC105641033 [Jatropha curcas]
18 Hb_001218_050 0.1510739817 - - Ribosome-binding protein, putative [Ricinus communis]
19 Hb_001752_040 0.1517757903 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
20 Hb_005565_040 0.1523399217 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_015354_010 Hb_015354_010 Hb_001052_040 Hb_001052_040 Hb_015354_010--Hb_001052_040 Hb_003038_220 Hb_003038_220 Hb_015354_010--Hb_003038_220 Hb_173178_020 Hb_173178_020 Hb_015354_010--Hb_173178_020 Hb_000152_670 Hb_000152_670 Hb_015354_010--Hb_000152_670 Hb_142751_010 Hb_142751_010 Hb_015354_010--Hb_142751_010 Hb_002742_080 Hb_002742_080 Hb_015354_010--Hb_002742_080 Hb_000886_060 Hb_000886_060 Hb_001052_040--Hb_000886_060 Hb_001052_040--Hb_000152_670 Hb_001052_040--Hb_002742_080 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_001052_040--Hb_173178_020 Hb_012760_130 Hb_012760_130 Hb_003038_220--Hb_012760_130 Hb_007123_060 Hb_007123_060 Hb_003038_220--Hb_007123_060 Hb_003925_070 Hb_003925_070 Hb_003038_220--Hb_003925_070 Hb_004883_050 Hb_004883_050 Hb_003038_220--Hb_004883_050 Hb_004935_080 Hb_004935_080 Hb_003038_220--Hb_004935_080 Hb_001616_090 Hb_001616_090 Hb_173178_020--Hb_001616_090 Hb_031091_010 Hb_031091_010 Hb_173178_020--Hb_031091_010 Hb_003716_020 Hb_003716_020 Hb_173178_020--Hb_003716_020 Hb_000352_090 Hb_000352_090 Hb_173178_020--Hb_000352_090 Hb_009411_020 Hb_009411_020 Hb_173178_020--Hb_009411_020 Hb_008714_020 Hb_008714_020 Hb_173178_020--Hb_008714_020 Hb_128376_010 Hb_128376_010 Hb_000152_670--Hb_128376_010 Hb_000996_180 Hb_000996_180 Hb_000152_670--Hb_000996_180 Hb_004017_040 Hb_004017_040 Hb_000152_670--Hb_004017_040 Hb_009646_050 Hb_009646_050 Hb_000152_670--Hb_009646_050 Hb_000429_250 Hb_000429_250 Hb_142751_010--Hb_000429_250 Hb_001623_300 Hb_001623_300 Hb_142751_010--Hb_001623_300 Hb_001767_120 Hb_001767_120 Hb_142751_010--Hb_001767_120 Hb_088428_010 Hb_088428_010 Hb_142751_010--Hb_088428_010 Hb_001623_290 Hb_001623_290 Hb_142751_010--Hb_001623_290 Hb_005333_030 Hb_005333_030 Hb_002742_080--Hb_005333_030 Hb_003710_040 Hb_003710_040 Hb_002742_080--Hb_003710_040 Hb_000261_290 Hb_000261_290 Hb_002742_080--Hb_000261_290 Hb_002742_080--Hb_128376_010 Hb_002320_070 Hb_002320_070 Hb_002742_080--Hb_002320_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
388.93 314.743 168.584 290.972 248.773 672.069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
185.459 128.495 61.776 74.8421 40.584

CAGE analysis