Hb_000996_180

Information

Type -
Description -
Location Contig996: 192945-196262
Sequence    

Annotation

kegg
ID pop:POPTR_0001s09070g
description POPTRDRAFT_709387; senescence-associated family protein
nr
ID XP_012086951.1
description PREDICTED: tetraspanin-10 [Jatropha curcas]
swissprot
ID F4I214
description Tetraspanin-10 OS=Arabidopsis thaliana GN=TET10 PE=2 SV=1
trembl
ID A0A067K0Z1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20625 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-10 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64838: 166770-196457
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000996_180 0.0 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
2 Hb_107847_010 0.1190189837 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
3 Hb_089889_020 0.1209046428 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
4 Hb_009693_030 0.1209082813 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000152_670 0.1221392875 - - hypothetical protein VITISV_037603 [Vitis vinifera]
6 Hb_009838_130 0.1378393451 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
7 Hb_002411_180 0.147764764 - - PREDICTED: THO complex subunit 1 isoform X1 [Jatropha curcas]
8 Hb_000258_320 0.1538784885 - - -
9 Hb_001052_040 0.161075791 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
10 Hb_001910_020 0.1634653588 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
11 Hb_015354_010 0.1650843628 - - PREDICTED: B2 protein [Jatropha curcas]
12 Hb_156144_010 0.166352047 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]
13 Hb_160203_010 0.1709100081 - - -
14 Hb_000365_160 0.1716292645 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
15 Hb_010883_080 0.1725709718 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
16 Hb_000186_260 0.1736211602 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
17 Hb_073973_160 0.1758290574 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
18 Hb_009646_050 0.1779428286 - - conserved hypothetical protein [Ricinus communis]
19 Hb_017259_010 0.1781212463 - - -
20 Hb_000504_170 0.179314831 - - hypothetical protein B456_006G033900 [Gossypium raimondii]

Gene co-expression network

sample Hb_000996_180 Hb_000996_180 Hb_107847_010 Hb_107847_010 Hb_000996_180--Hb_107847_010 Hb_089889_020 Hb_089889_020 Hb_000996_180--Hb_089889_020 Hb_009693_030 Hb_009693_030 Hb_000996_180--Hb_009693_030 Hb_000152_670 Hb_000152_670 Hb_000996_180--Hb_000152_670 Hb_009838_130 Hb_009838_130 Hb_000996_180--Hb_009838_130 Hb_002411_180 Hb_002411_180 Hb_000996_180--Hb_002411_180 Hb_107847_010--Hb_089889_020 Hb_107847_010--Hb_009838_130 Hb_000504_170 Hb_000504_170 Hb_107847_010--Hb_000504_170 Hb_107847_010--Hb_009693_030 Hb_000264_060 Hb_000264_060 Hb_107847_010--Hb_000264_060 Hb_089889_020--Hb_009838_130 Hb_007123_070 Hb_007123_070 Hb_089889_020--Hb_007123_070 Hb_001910_020 Hb_001910_020 Hb_089889_020--Hb_001910_020 Hb_017259_010 Hb_017259_010 Hb_089889_020--Hb_017259_010 Hb_003177_010 Hb_003177_010 Hb_009693_030--Hb_003177_010 Hb_009693_030--Hb_089889_020 Hb_009693_030--Hb_001910_020 Hb_073973_160 Hb_073973_160 Hb_009693_030--Hb_073973_160 Hb_001052_040 Hb_001052_040 Hb_000152_670--Hb_001052_040 Hb_128376_010 Hb_128376_010 Hb_000152_670--Hb_128376_010 Hb_004017_040 Hb_004017_040 Hb_000152_670--Hb_004017_040 Hb_015354_010 Hb_015354_010 Hb_000152_670--Hb_015354_010 Hb_009646_050 Hb_009646_050 Hb_000152_670--Hb_009646_050 Hb_009838_130--Hb_017259_010 Hb_009838_130--Hb_002411_180 Hb_008518_050 Hb_008518_050 Hb_009838_130--Hb_008518_050 Hb_004374_150 Hb_004374_150 Hb_009838_130--Hb_004374_150 Hb_000529_080 Hb_000529_080 Hb_009838_130--Hb_000529_080 Hb_007643_050 Hb_007643_050 Hb_009838_130--Hb_007643_050 Hb_001396_290 Hb_001396_290 Hb_002411_180--Hb_001396_290 Hb_002411_180--Hb_008518_050 Hb_009913_050 Hb_009913_050 Hb_002411_180--Hb_009913_050 Hb_005214_060 Hb_005214_060 Hb_002411_180--Hb_005214_060 Hb_002048_090 Hb_002048_090 Hb_002411_180--Hb_002048_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
137.8 90.7587 63.3377 56.6479 128.421 154.121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.9273 22.9825 4.56356 9.97397 3.62843

CAGE analysis