Hb_007123_070

Information

Type -
Description -
Location Contig7123: 131616-135522
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55363: 129300-135515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007123_070 0.0 - - -
2 Hb_000152_230 0.1058735838 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
3 Hb_092337_020 0.1148540051 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
4 Hb_000175_090 0.116413924 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000563_330 0.1172975217 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
6 Hb_089889_020 0.1197626066 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
7 Hb_000529_210 0.128344605 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
8 Hb_006452_160 0.1289899513 - - structural constituent of ribosome, putative [Ricinus communis]
9 Hb_188996_010 0.1296084868 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003142_070 0.1314296074 - - hypothetical protein F383_14657 [Gossypium arboreum]
11 Hb_007951_100 0.1329959989 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_002043_090 0.1334531153 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
13 Hb_000169_190 0.1335623395 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
14 Hb_027472_210 0.1335644019 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
15 Hb_000948_180 0.1340764817 - - PREDICTED: uncharacterized protein LOC105629501 [Jatropha curcas]
16 Hb_000261_110 0.1344160566 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
17 Hb_003994_140 0.1356041401 - - conserved hypothetical protein [Ricinus communis]
18 Hb_032202_230 0.1391410585 - - peroxisomal biogenesis factor, putative [Ricinus communis]
19 Hb_003125_070 0.1396789264 - - PREDICTED: serine/threonine-protein kinase rio1-like [Jatropha curcas]
20 Hb_001427_050 0.140674124 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]

Gene co-expression network

sample Hb_007123_070 Hb_007123_070 Hb_000152_230 Hb_000152_230 Hb_007123_070--Hb_000152_230 Hb_092337_020 Hb_092337_020 Hb_007123_070--Hb_092337_020 Hb_000175_090 Hb_000175_090 Hb_007123_070--Hb_000175_090 Hb_000563_330 Hb_000563_330 Hb_007123_070--Hb_000563_330 Hb_089889_020 Hb_089889_020 Hb_007123_070--Hb_089889_020 Hb_000529_210 Hb_000529_210 Hb_007123_070--Hb_000529_210 Hb_001898_240 Hb_001898_240 Hb_000152_230--Hb_001898_240 Hb_006261_090 Hb_006261_090 Hb_000152_230--Hb_006261_090 Hb_000313_300 Hb_000313_300 Hb_000152_230--Hb_000313_300 Hb_000261_110 Hb_000261_110 Hb_000152_230--Hb_000261_110 Hb_000152_230--Hb_000529_210 Hb_092337_020--Hb_000563_330 Hb_063805_010 Hb_063805_010 Hb_092337_020--Hb_063805_010 Hb_027472_210 Hb_027472_210 Hb_092337_020--Hb_027472_210 Hb_000261_250 Hb_000261_250 Hb_092337_020--Hb_000261_250 Hb_092337_020--Hb_000175_090 Hb_141532_010 Hb_141532_010 Hb_000175_090--Hb_141532_010 Hb_004363_010 Hb_004363_010 Hb_000175_090--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_000175_090--Hb_000976_260 Hb_012114_060 Hb_012114_060 Hb_000175_090--Hb_012114_060 Hb_002292_010 Hb_002292_010 Hb_000175_090--Hb_002292_010 Hb_000175_090--Hb_000261_250 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_039605_010 Hb_039605_010 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_009838_130 Hb_009838_130 Hb_089889_020--Hb_009838_130 Hb_000996_180 Hb_000996_180 Hb_089889_020--Hb_000996_180 Hb_001910_020 Hb_001910_020 Hb_089889_020--Hb_001910_020 Hb_107847_010 Hb_107847_010 Hb_089889_020--Hb_107847_010 Hb_017259_010 Hb_017259_010 Hb_089889_020--Hb_017259_010 Hb_001195_570 Hb_001195_570 Hb_000529_210--Hb_001195_570 Hb_004785_190 Hb_004785_190 Hb_000529_210--Hb_004785_190 Hb_000529_210--Hb_000175_090 Hb_000529_210--Hb_092337_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.042 10.9159 13.7696 4.57354 13.1464 13.228
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.24222 8.18911 0.979515 1.60336 3.04317

CAGE analysis