Hb_092337_020

Information

Type -
Description -
Location Contig92337: 12457-12900
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14680g
description histone H2B family protein
nr
ID KJB83793.1
description hypothetical protein B456_013G264900 [Gossypium raimondii]
swissprot
ID Q1S9I9
description Probable histone H2B.1 OS=Medicago truncatula PE=3 SV=3
trembl
ID A0A0D2U7I0
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G264900 PE=4 SV=1
Gene Ontology
ID GO:0000786
description histone h2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62575: 12388-13246
cDNA
(Sanger)
(ID:Location)		 005_B13.ab1: 12388-13058 , 008_P22.ab1: 12388-13059 , 018_J15.ab1: 12388-13058 , 019_C03.ab1: 12388-12814 , 020_M21.ab1: 12388-13063 , 022_G12.ab1: 12389-12613 , 023_N09.ab1: 12388-12651 , 028_P09.ab1: 12389-12579 , 031_G08.ab1: 12388-13058 , 033_M10.ab1: 12388-13058 , 037_G18.ab1: 12388-13061 , 052_L13.ab1: 12388-13058

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092337_020 0.0 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
2 Hb_000563_330 0.1010613067 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
3 Hb_063805_010 0.108513149 - - -
4 Hb_027472_210 0.1101424047 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
5 Hb_000261_250 0.1106160441 - - elongation factor 1-alpha [Lepidium sativum]
6 Hb_000175_090 0.1119727733 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007123_070 0.1148540051 - - -
8 Hb_000140_330 0.1200565542 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
9 Hb_002043_090 0.1204534946 - - hypothetical protein JCGZ_24811 [Jatropha curcas]
10 Hb_000836_430 0.1223033908 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
11 Hb_002026_140 0.1236352506 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
12 Hb_027073_030 0.126608146 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
13 Hb_006452_160 0.1271035524 - - structural constituent of ribosome, putative [Ricinus communis]
14 Hb_003142_070 0.1273379049 - - hypothetical protein F383_14657 [Gossypium arboreum]
15 Hb_000661_140 0.1293048942 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
16 Hb_002228_110 0.1307793748 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
17 Hb_000976_260 0.1325418153 - - -
18 Hb_004785_190 0.1335932262 - - PHD finger family protein [Populus trichocarpa]
19 Hb_000529_210 0.1337268532 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
20 Hb_032202_230 0.1338431557 - - peroxisomal biogenesis factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_092337_020 Hb_092337_020 Hb_000563_330 Hb_000563_330 Hb_092337_020--Hb_000563_330 Hb_063805_010 Hb_063805_010 Hb_092337_020--Hb_063805_010 Hb_027472_210 Hb_027472_210 Hb_092337_020--Hb_027472_210 Hb_000261_250 Hb_000261_250 Hb_092337_020--Hb_000261_250 Hb_000175_090 Hb_000175_090 Hb_092337_020--Hb_000175_090 Hb_007123_070 Hb_007123_070 Hb_092337_020--Hb_007123_070 Hb_006452_160 Hb_006452_160 Hb_000563_330--Hb_006452_160 Hb_002739_130 Hb_002739_130 Hb_000563_330--Hb_002739_130 Hb_003994_140 Hb_003994_140 Hb_000563_330--Hb_003994_140 Hb_039605_010 Hb_039605_010 Hb_000563_330--Hb_039605_010 Hb_058551_010 Hb_058551_010 Hb_000563_330--Hb_058551_010 Hb_016734_090 Hb_016734_090 Hb_000563_330--Hb_016734_090 Hb_063805_010--Hb_027472_210 Hb_001300_100 Hb_001300_100 Hb_063805_010--Hb_001300_100 Hb_063805_010--Hb_000563_330 Hb_002947_040 Hb_002947_040 Hb_063805_010--Hb_002947_040 Hb_042509_030 Hb_042509_030 Hb_063805_010--Hb_042509_030 Hb_027472_210--Hb_000563_330 Hb_007083_010 Hb_007083_010 Hb_027472_210--Hb_007083_010 Hb_000169_190 Hb_000169_190 Hb_027472_210--Hb_000169_190 Hb_005291_040 Hb_005291_040 Hb_027472_210--Hb_005291_040 Hb_000394_190 Hb_000394_190 Hb_000261_250--Hb_000394_190 Hb_002192_080 Hb_002192_080 Hb_000261_250--Hb_002192_080 Hb_001142_050 Hb_001142_050 Hb_000261_250--Hb_001142_050 Hb_000359_330 Hb_000359_330 Hb_000261_250--Hb_000359_330 Hb_003849_060 Hb_003849_060 Hb_000261_250--Hb_003849_060 Hb_106552_050 Hb_106552_050 Hb_000261_250--Hb_106552_050 Hb_141532_010 Hb_141532_010 Hb_000175_090--Hb_141532_010 Hb_004363_010 Hb_004363_010 Hb_000175_090--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_000175_090--Hb_000976_260 Hb_012114_060 Hb_012114_060 Hb_000175_090--Hb_012114_060 Hb_002292_010 Hb_002292_010 Hb_000175_090--Hb_002292_010 Hb_000175_090--Hb_000261_250 Hb_000152_230 Hb_000152_230 Hb_007123_070--Hb_000152_230 Hb_007123_070--Hb_000175_090 Hb_007123_070--Hb_000563_330 Hb_089889_020 Hb_089889_020 Hb_007123_070--Hb_089889_020 Hb_000529_210 Hb_000529_210 Hb_007123_070--Hb_000529_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
663.946 613.863 792.311 124.595 507.484 569.25
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
293.727 479.373 176.648 112.863 138.246

CAGE analysis