Hb_042509_030

Information

Type -
Description -
Location Contig42509: 30061-34055
Sequence    

Annotation

kegg
ID rcu:RCOM_0107360
description zinc finger protein, putative
nr
ID XP_012084355.1
description PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
swissprot
ID Q9SYM2
description B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2
trembl
ID A0A067JXZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19560 PE=4 SV=1
Gene Ontology
ID GO:0005622
description b-box zinc finger protein 22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42004: 30163-31813 , PASA_asmbl_42005: 30194-30646
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042509_030 0.0 - - PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
2 Hb_000139_190 0.1328493044 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
3 Hb_009393_220 0.1329916091 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
4 Hb_000227_250 0.135146321 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
5 Hb_092337_020 0.1355903663 - - hypothetical protein B456_013G264900 [Gossypium raimondii]
6 Hb_000407_040 0.1365097386 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
7 Hb_000042_340 0.1371423756 - - PREDICTED: vesicle-associated protein 4-1-like [Jatropha curcas]
8 Hb_185516_010 0.1383791485 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_000983_120 0.1389237193 - - cyclin-dependent protein kinase, putative [Ricinus communis]
10 Hb_027073_030 0.1408000269 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
11 Hb_000707_060 0.1410385172 - - -
12 Hb_063805_010 0.1411500496 - - -
13 Hb_011930_110 0.1443317558 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
14 Hb_006346_040 0.1448311782 - - hypothetical protein JCGZ_20335 [Jatropha curcas]
15 Hb_002681_060 0.1454056525 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
16 Hb_001652_080 0.1491162783 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
17 Hb_001477_070 0.1496224003 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000140_330 0.1502018115 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
19 Hb_014361_150 0.1523714051 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
20 Hb_000125_200 0.1528894307 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]

Gene co-expression network

sample Hb_042509_030 Hb_042509_030 Hb_000139_190 Hb_000139_190 Hb_042509_030--Hb_000139_190 Hb_009393_220 Hb_009393_220 Hb_042509_030--Hb_009393_220 Hb_000227_250 Hb_000227_250 Hb_042509_030--Hb_000227_250 Hb_092337_020 Hb_092337_020 Hb_042509_030--Hb_092337_020 Hb_000407_040 Hb_000407_040 Hb_042509_030--Hb_000407_040 Hb_000042_340 Hb_000042_340 Hb_042509_030--Hb_000042_340 Hb_027073_030 Hb_027073_030 Hb_000139_190--Hb_027073_030 Hb_010998_040 Hb_010998_040 Hb_000139_190--Hb_010998_040 Hb_039605_010 Hb_039605_010 Hb_000139_190--Hb_039605_010 Hb_032264_060 Hb_032264_060 Hb_000139_190--Hb_032264_060 Hb_010362_030 Hb_010362_030 Hb_000139_190--Hb_010362_030 Hb_000287_050 Hb_000287_050 Hb_000139_190--Hb_000287_050 Hb_011930_110 Hb_011930_110 Hb_009393_220--Hb_011930_110 Hb_004440_040 Hb_004440_040 Hb_009393_220--Hb_004440_040 Hb_008103_110 Hb_008103_110 Hb_009393_220--Hb_008103_110 Hb_010012_010 Hb_010012_010 Hb_009393_220--Hb_010012_010 Hb_000120_270 Hb_000120_270 Hb_009393_220--Hb_000120_270 Hb_003728_040 Hb_003728_040 Hb_009393_220--Hb_003728_040 Hb_005883_010 Hb_005883_010 Hb_000227_250--Hb_005883_010 Hb_005188_060 Hb_005188_060 Hb_000227_250--Hb_005188_060 Hb_000140_330 Hb_000140_330 Hb_000227_250--Hb_000140_330 Hb_001652_080 Hb_001652_080 Hb_000227_250--Hb_001652_080 Hb_000181_120 Hb_000181_120 Hb_000227_250--Hb_000181_120 Hb_007943_120 Hb_007943_120 Hb_000227_250--Hb_007943_120 Hb_000563_330 Hb_000563_330 Hb_092337_020--Hb_000563_330 Hb_063805_010 Hb_063805_010 Hb_092337_020--Hb_063805_010 Hb_027472_210 Hb_027472_210 Hb_092337_020--Hb_027472_210 Hb_000261_250 Hb_000261_250 Hb_092337_020--Hb_000261_250 Hb_000175_090 Hb_000175_090 Hb_092337_020--Hb_000175_090 Hb_007123_070 Hb_007123_070 Hb_092337_020--Hb_007123_070 Hb_002681_060 Hb_002681_060 Hb_000407_040--Hb_002681_060 Hb_000010_240 Hb_000010_240 Hb_000407_040--Hb_000010_240 Hb_000059_340 Hb_000059_340 Hb_000407_040--Hb_000059_340 Hb_000061_470 Hb_000061_470 Hb_000407_040--Hb_000061_470 Hb_001477_070 Hb_001477_070 Hb_000407_040--Hb_001477_070 Hb_000407_040--Hb_008103_110 Hb_000983_120 Hb_000983_120 Hb_000042_340--Hb_000983_120 Hb_000599_080 Hb_000599_080 Hb_000042_340--Hb_000599_080 Hb_000042_340--Hb_001652_080 Hb_000042_340--Hb_010362_030 Hb_000525_100 Hb_000525_100 Hb_000042_340--Hb_000525_100 Hb_003292_050 Hb_003292_050 Hb_000042_340--Hb_003292_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.2009 25.6867 28.3207 5.24636 15.7465 12.6488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.359 9.69554 10.9078 2.18473 8.48421

CAGE analysis