Hb_010012_010

Information

Type -
Description -
Location Contig10012: 790-5566
Sequence    

Annotation

kegg
ID rcu:RCOM_1021590
description hypothetical protein
nr
ID XP_002518141.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9RWM2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1021590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010012_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009393_220 0.1196031267 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
3 Hb_005725_030 0.1416746063 - - PREDICTED: U-box domain-containing protein 27-like [Beta vulgaris subsp. vulgaris]
4 Hb_011930_110 0.1611579467 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
5 Hb_000424_060 0.1624057469 - - PREDICTED: myosin-15 [Jatropha curcas]
6 Hb_042509_030 0.1634213816 - - PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
7 Hb_002184_110 0.1636608939 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 [Jatropha curcas]
8 Hb_001500_060 0.1637405091 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
9 Hb_001252_230 0.1637563511 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
10 Hb_003142_030 0.1686408351 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]
11 Hb_003728_040 0.1689015836 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
12 Hb_000072_250 0.1701278719 transcription factor TF Family: Orphans -
13 Hb_003435_050 0.1703715062 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Jatropha curcas]
14 Hb_008103_110 0.1735987322 - - ATP binding protein, putative [Ricinus communis]
15 Hb_000061_030 0.1762358104 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
16 Hb_000120_270 0.1767765159 - - PREDICTED: histone deacetylase 8 [Jatropha curcas]
17 Hb_011129_040 0.1780522086 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
18 Hb_002234_180 0.1781659401 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004440_040 0.1799298936 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_002263_040 0.182043044 - - carbon catabolite repressor protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010012_010 Hb_010012_010 Hb_009393_220 Hb_009393_220 Hb_010012_010--Hb_009393_220 Hb_005725_030 Hb_005725_030 Hb_010012_010--Hb_005725_030 Hb_011930_110 Hb_011930_110 Hb_010012_010--Hb_011930_110 Hb_000424_060 Hb_000424_060 Hb_010012_010--Hb_000424_060 Hb_042509_030 Hb_042509_030 Hb_010012_010--Hb_042509_030 Hb_002184_110 Hb_002184_110 Hb_010012_010--Hb_002184_110 Hb_009393_220--Hb_011930_110 Hb_004440_040 Hb_004440_040 Hb_009393_220--Hb_004440_040 Hb_008103_110 Hb_008103_110 Hb_009393_220--Hb_008103_110 Hb_000120_270 Hb_000120_270 Hb_009393_220--Hb_000120_270 Hb_003728_040 Hb_003728_040 Hb_009393_220--Hb_003728_040 Hb_002929_060 Hb_002929_060 Hb_005725_030--Hb_002929_060 Hb_001500_060 Hb_001500_060 Hb_005725_030--Hb_001500_060 Hb_001252_230 Hb_001252_230 Hb_005725_030--Hb_001252_230 Hb_000061_030 Hb_000061_030 Hb_005725_030--Hb_000061_030 Hb_170416_010 Hb_170416_010 Hb_005725_030--Hb_170416_010 Hb_001761_120 Hb_001761_120 Hb_005725_030--Hb_001761_120 Hb_011930_110--Hb_004440_040 Hb_002263_040 Hb_002263_040 Hb_011930_110--Hb_002263_040 Hb_001754_030 Hb_001754_030 Hb_011930_110--Hb_001754_030 Hb_001728_050 Hb_001728_050 Hb_011930_110--Hb_001728_050 Hb_000103_100 Hb_000103_100 Hb_011930_110--Hb_000103_100 Hb_000803_070 Hb_000803_070 Hb_011930_110--Hb_000803_070 Hb_002820_030 Hb_002820_030 Hb_000424_060--Hb_002820_030 Hb_003142_030 Hb_003142_030 Hb_000424_060--Hb_003142_030 Hb_000181_090 Hb_000181_090 Hb_000424_060--Hb_000181_090 Hb_001951_200 Hb_001951_200 Hb_000424_060--Hb_001951_200 Hb_007533_010 Hb_007533_010 Hb_000424_060--Hb_007533_010 Hb_000010_110 Hb_000010_110 Hb_000424_060--Hb_000010_110 Hb_000139_190 Hb_000139_190 Hb_042509_030--Hb_000139_190 Hb_042509_030--Hb_009393_220 Hb_000227_250 Hb_000227_250 Hb_042509_030--Hb_000227_250 Hb_092337_020 Hb_092337_020 Hb_042509_030--Hb_092337_020 Hb_000407_040 Hb_000407_040 Hb_042509_030--Hb_000407_040 Hb_000042_340 Hb_000042_340 Hb_042509_030--Hb_000042_340 Hb_092462_020 Hb_092462_020 Hb_002184_110--Hb_092462_020 Hb_011930_020 Hb_011930_020 Hb_002184_110--Hb_011930_020 Hb_002184_110--Hb_003142_030 Hb_001307_220 Hb_001307_220 Hb_002184_110--Hb_001307_220 Hb_006478_040 Hb_006478_040 Hb_002184_110--Hb_006478_040 Hb_000729_030 Hb_000729_030 Hb_002184_110--Hb_000729_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0623217 0.135137 0.0976851 0.0162056 0.0403052 0.0591505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0950764 0.0373904 0.0690484 0.0150183 0.0767657

CAGE analysis