Hb_001252_230

Information

Type -
Description -
Location Contig1252: 336873-345288
Sequence    

Annotation

kegg
ID rcu:RCOM_1469310
description kelch repeat protein, putative
nr
ID XP_012080404.1
description PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
swissprot
ID Q7M3S9
description RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2
trembl
ID A0A067K5H1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11743 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07761: 341782-343020 , PASA_asmbl_07762: 343104-345470 , PASA_asmbl_07763: 343261-343388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001252_230 0.0 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
2 Hb_060094_020 0.0684975804 desease resistance Gene Name: ATP_bind_1 xpa-binding protein, putative [Ricinus communis]
3 Hb_000645_170 0.0741928625 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000205_260 0.0750829145 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
5 Hb_007044_110 0.076725227 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_005288_070 0.0781889107 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
7 Hb_000086_500 0.0782790416 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
8 Hb_000457_230 0.0790668244 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
9 Hb_023226_070 0.0804238122 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000329_370 0.0812433263 - - hypothetical protein JCGZ_14571 [Jatropha curcas]
11 Hb_003929_280 0.0816262043 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
12 Hb_008059_010 0.0820138857 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04810, chloroplastic [Jatropha curcas]
13 Hb_005523_020 0.0820279324 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
14 Hb_002329_020 0.0852289694 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
15 Hb_002085_030 0.0855816309 - - PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
16 Hb_001636_050 0.0871197425 transcription factor TF Family: NF-X1 nuclear transcription factor, X-box binding, putative [Ricinus communis]
17 Hb_004236_050 0.0894112171 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
18 Hb_000061_030 0.0896809266 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
19 Hb_001430_080 0.0911373326 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
20 Hb_012194_030 0.0922266404 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001252_230 Hb_001252_230 Hb_060094_020 Hb_060094_020 Hb_001252_230--Hb_060094_020 Hb_000645_170 Hb_000645_170 Hb_001252_230--Hb_000645_170 Hb_000205_260 Hb_000205_260 Hb_001252_230--Hb_000205_260 Hb_007044_110 Hb_007044_110 Hb_001252_230--Hb_007044_110 Hb_005288_070 Hb_005288_070 Hb_001252_230--Hb_005288_070 Hb_000086_500 Hb_000086_500 Hb_001252_230--Hb_000086_500 Hb_023226_070 Hb_023226_070 Hb_060094_020--Hb_023226_070 Hb_003927_040 Hb_003927_040 Hb_060094_020--Hb_003927_040 Hb_004870_050 Hb_004870_050 Hb_060094_020--Hb_004870_050 Hb_060094_020--Hb_000645_170 Hb_001754_030 Hb_001754_030 Hb_060094_020--Hb_001754_030 Hb_010417_070 Hb_010417_070 Hb_060094_020--Hb_010417_070 Hb_000645_170--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_000645_170--Hb_008568_020 Hb_001430_080 Hb_001430_080 Hb_000645_170--Hb_001430_080 Hb_004236_050 Hb_004236_050 Hb_000645_170--Hb_004236_050 Hb_001636_050 Hb_001636_050 Hb_000645_170--Hb_001636_050 Hb_154580_010 Hb_154580_010 Hb_000645_170--Hb_154580_010 Hb_005523_020 Hb_005523_020 Hb_000205_260--Hb_005523_020 Hb_000205_260--Hb_007044_110 Hb_000457_230 Hb_000457_230 Hb_000205_260--Hb_000457_230 Hb_000205_260--Hb_005288_070 Hb_007305_020 Hb_007305_020 Hb_000205_260--Hb_007305_020 Hb_008059_010 Hb_008059_010 Hb_000205_260--Hb_008059_010 Hb_007044_110--Hb_000457_230 Hb_055235_020 Hb_055235_020 Hb_007044_110--Hb_055235_020 Hb_007044_110--Hb_005523_020 Hb_007044_110--Hb_001636_050 Hb_004976_010 Hb_004976_010 Hb_007044_110--Hb_004976_010 Hb_007283_010 Hb_007283_010 Hb_005288_070--Hb_007283_010 Hb_030414_040 Hb_030414_040 Hb_005288_070--Hb_030414_040 Hb_005288_070--Hb_007044_110 Hb_005288_070--Hb_000457_230 Hb_000111_170 Hb_000111_170 Hb_005288_070--Hb_000111_170 Hb_008062_050 Hb_008062_050 Hb_000086_500--Hb_008062_050 Hb_128548_010 Hb_128548_010 Hb_000086_500--Hb_128548_010 Hb_002483_010 Hb_002483_010 Hb_000086_500--Hb_002483_010 Hb_000086_500--Hb_008568_020 Hb_001584_350 Hb_001584_350 Hb_000086_500--Hb_001584_350 Hb_000086_500--Hb_000645_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.95134 7.16452 7.19947 2.69068 3.71807 4.36766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.78516 3.00822 3.43053 3.5736 5.75266

CAGE analysis