Hb_002483_010

Information

Type transcription factor
Description TF Family: IWS1
Location Contig2483: 14235-18232
Sequence    

Annotation

kegg
ID rcu:RCOM_1632970
description hypothetical protein
nr
ID XP_002517284.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FHK9
description Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1
trembl
ID B9RU65
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1632970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable mediator of rna polymerase ii transcription subunit 26b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25840: 14389-14648 , PASA_asmbl_25841: 14668-18153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002483_010 0.0 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
2 Hb_000086_500 0.0683180253 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
3 Hb_008062_050 0.090501225 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]
4 Hb_000787_150 0.0960011375 - - PREDICTED: protein NDR1-like [Jatropha curcas]
5 Hb_000023_320 0.0962919572 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000926_010 0.0996879872 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
7 Hb_143766_110 0.101463832 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 1 [Jatropha curcas]
8 Hb_128548_010 0.107183835 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005542_050 0.10836417 - - PREDICTED: LOW QUALITY PROTEIN: probable inactive serine/threonine-protein kinase scy1 [Prunus mume]
10 Hb_001674_040 0.1084522641 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
11 Hb_003605_050 0.1099040568 - - protein with unknown function [Ricinus communis]
12 Hb_000579_190 0.1100456182 - - PREDICTED: mitogen-activated protein kinase homolog NTF3 [Jatropha curcas]
13 Hb_000139_190 0.1141929665 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2 [Jatropha curcas]
14 Hb_001662_040 0.1143411016 - - DNA helicase, putative [Ricinus communis]
15 Hb_000162_030 0.1153806922 desease resistance Gene Name: RLI ABC transporter family protein [Hevea brasiliensis]
16 Hb_010287_030 0.1165122891 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000125_200 0.1167478886 transcription factor TF Family: bZIP PREDICTED: probable transcription factor PosF21 [Jatropha curcas]
18 Hb_002325_040 0.1170497165 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
19 Hb_001147_110 0.1170868149 - - PREDICTED: dynamin-2A-like [Jatropha curcas]
20 Hb_000723_110 0.1173414261 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002483_010 Hb_002483_010 Hb_000086_500 Hb_000086_500 Hb_002483_010--Hb_000086_500 Hb_008062_050 Hb_008062_050 Hb_002483_010--Hb_008062_050 Hb_000787_150 Hb_000787_150 Hb_002483_010--Hb_000787_150 Hb_000023_320 Hb_000023_320 Hb_002483_010--Hb_000023_320 Hb_000926_010 Hb_000926_010 Hb_002483_010--Hb_000926_010 Hb_143766_110 Hb_143766_110 Hb_002483_010--Hb_143766_110 Hb_000086_500--Hb_008062_050 Hb_128548_010 Hb_128548_010 Hb_000086_500--Hb_128548_010 Hb_008568_020 Hb_008568_020 Hb_000086_500--Hb_008568_020 Hb_001584_350 Hb_001584_350 Hb_000086_500--Hb_001584_350 Hb_000645_170 Hb_000645_170 Hb_000086_500--Hb_000645_170 Hb_001147_110 Hb_001147_110 Hb_008062_050--Hb_001147_110 Hb_000162_030 Hb_000162_030 Hb_008062_050--Hb_000162_030 Hb_008062_050--Hb_143766_110 Hb_008062_050--Hb_128548_010 Hb_001268_280 Hb_001268_280 Hb_008062_050--Hb_001268_280 Hb_000787_150--Hb_001584_350 Hb_000787_150--Hb_000086_500 Hb_000174_150 Hb_000174_150 Hb_000787_150--Hb_000174_150 Hb_002965_040 Hb_002965_040 Hb_000787_150--Hb_002965_040 Hb_000205_130 Hb_000205_130 Hb_000787_150--Hb_000205_130 Hb_001258_100 Hb_001258_100 Hb_000787_150--Hb_001258_100 Hb_000023_320--Hb_000926_010 Hb_001636_050 Hb_001636_050 Hb_000023_320--Hb_001636_050 Hb_000264_070 Hb_000264_070 Hb_000023_320--Hb_000264_070 Hb_001047_200 Hb_001047_200 Hb_000023_320--Hb_001047_200 Hb_000679_340 Hb_000679_340 Hb_000023_320--Hb_000679_340 Hb_000023_320--Hb_143766_110 Hb_000723_110 Hb_000723_110 Hb_000926_010--Hb_000723_110 Hb_005542_050 Hb_005542_050 Hb_000926_010--Hb_005542_050 Hb_010661_020 Hb_010661_020 Hb_000926_010--Hb_010661_020 Hb_029695_020 Hb_029695_020 Hb_000926_010--Hb_029695_020 Hb_000264_080 Hb_000264_080 Hb_000926_010--Hb_000264_080 Hb_001405_190 Hb_001405_190 Hb_143766_110--Hb_001405_190 Hb_143766_110--Hb_000162_030 Hb_000260_440 Hb_000260_440 Hb_143766_110--Hb_000260_440 Hb_143766_110--Hb_000264_070 Hb_010362_030 Hb_010362_030 Hb_143766_110--Hb_010362_030 Hb_007929_080 Hb_007929_080 Hb_143766_110--Hb_007929_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1632 25.1734 29.2892 9.7314 12.4842 15.3198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.1248 5.72362 8.8827 15.3384 8.80368

CAGE analysis