Hb_003728_040

Information

Type -
Description -
Location Contig3728: 35293-40063
Sequence    

Annotation

kegg
ID tcc:TCM_023614
description DNA/RNA polymerases superfamily protein
nr
ID XP_012567460.1
description PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
swissprot
ID P0CT43
description Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1
trembl
ID A0A061F2F5
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_023615 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003728_040 0.0 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
2 Hb_003055_140 0.080193505 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
3 Hb_001766_020 0.0913584815 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
4 Hb_000442_010 0.0937841604 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
5 Hb_004440_040 0.0952945675 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_001104_170 0.0996597966 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2c [Jatropha curcas]
7 Hb_000347_120 0.1061059798 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
8 Hb_002263_040 0.1113676516 - - carbon catabolite repressor protein, putative [Ricinus communis]
9 Hb_000256_140 0.1140893613 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
10 Hb_011930_110 0.1157519966 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
11 Hb_003055_060 0.1197861381 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
12 Hb_002636_100 0.1234805962 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
13 Hb_009393_220 0.1247508407 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
14 Hb_005725_210 0.126157799 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
15 Hb_008103_110 0.1280985188 - - ATP binding protein, putative [Ricinus communis]
16 Hb_005389_160 0.1298560454 - - PREDICTED: casein kinase I [Jatropha curcas]
17 Hb_003097_100 0.1321051385 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
18 Hb_000019_040 0.1329197424 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
19 Hb_000291_010 0.1329300025 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
20 Hb_001828_130 0.1329846229 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]

Gene co-expression network

sample Hb_003728_040 Hb_003728_040 Hb_003055_140 Hb_003055_140 Hb_003728_040--Hb_003055_140 Hb_001766_020 Hb_001766_020 Hb_003728_040--Hb_001766_020 Hb_000442_010 Hb_000442_010 Hb_003728_040--Hb_000442_010 Hb_004440_040 Hb_004440_040 Hb_003728_040--Hb_004440_040 Hb_001104_170 Hb_001104_170 Hb_003728_040--Hb_001104_170 Hb_000347_120 Hb_000347_120 Hb_003728_040--Hb_000347_120 Hb_003055_140--Hb_000442_010 Hb_001629_060 Hb_001629_060 Hb_003055_140--Hb_001629_060 Hb_003055_140--Hb_001104_170 Hb_000953_050 Hb_000953_050 Hb_003055_140--Hb_000953_050 Hb_000866_210 Hb_000866_210 Hb_003055_140--Hb_000866_210 Hb_001766_020--Hb_001104_170 Hb_001766_020--Hb_000442_010 Hb_001766_020--Hb_004440_040 Hb_000905_210 Hb_000905_210 Hb_001766_020--Hb_000905_210 Hb_005389_160 Hb_005389_160 Hb_001766_020--Hb_005389_160 Hb_002798_070 Hb_002798_070 Hb_000442_010--Hb_002798_070 Hb_002263_040 Hb_002263_040 Hb_000442_010--Hb_002263_040 Hb_000442_010--Hb_001104_170 Hb_005725_210 Hb_005725_210 Hb_000442_010--Hb_005725_210 Hb_000442_010--Hb_005389_160 Hb_000243_250 Hb_000243_250 Hb_000442_010--Hb_000243_250 Hb_011930_110 Hb_011930_110 Hb_004440_040--Hb_011930_110 Hb_004440_040--Hb_000347_120 Hb_004440_040--Hb_002263_040 Hb_002636_100 Hb_002636_100 Hb_004440_040--Hb_002636_100 Hb_003055_060 Hb_003055_060 Hb_004440_040--Hb_003055_060 Hb_001104_170--Hb_005389_160 Hb_000291_010 Hb_000291_010 Hb_001104_170--Hb_000291_010 Hb_000363_400 Hb_000363_400 Hb_001104_170--Hb_000363_400 Hb_001410_020 Hb_001410_020 Hb_001104_170--Hb_001410_020 Hb_000373_100 Hb_000373_100 Hb_000347_120--Hb_000373_100 Hb_000347_120--Hb_005389_160 Hb_010417_070 Hb_010417_070 Hb_000347_120--Hb_010417_070 Hb_000094_320 Hb_000094_320 Hb_000347_120--Hb_000094_320 Hb_004410_070 Hb_004410_070 Hb_000347_120--Hb_004410_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.305105 0.766503 0.305761 0.0910692 0.155186 0.188645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.232266 0.22847 0.32778 0.226544 0.219356

CAGE analysis