Hb_000905_210

Information

Type -
Description -
Location Contig905: 198049-207341
Sequence    

Annotation

kegg
ID vvi:100855398
description uncharacterized LOC100855398
nr
ID XP_012065541.1
description PREDICTED: protein gar2 [Jatropha curcas]
swissprot
ID Q9FJN9
description Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PABN2 PE=1 SV=1
trembl
ID A0A067L878
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16740 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nucleolin 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62019: 200412-204208 , PASA_asmbl_62021: 205378-207492
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000905_210 0.0 - - PREDICTED: protein gar2 [Jatropha curcas]
2 Hb_003682_030 0.0875330162 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
3 Hb_004870_050 0.0886676934 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
4 Hb_000260_180 0.0910257758 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
5 Hb_002263_040 0.0923282493 - - carbon catabolite repressor protein, putative [Ricinus communis]
6 Hb_008695_090 0.0941227293 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
7 Hb_001766_020 0.0943159009 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
8 Hb_006588_210 0.0953848479 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
9 Hb_000442_010 0.0961479263 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
10 Hb_001410_020 0.0981160938 - - cdk8, putative [Ricinus communis]
11 Hb_000094_090 0.0999711865 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
12 Hb_000019_050 0.1017168166 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
13 Hb_000373_230 0.1042979939 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
14 Hb_001225_030 0.1060890681 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 1 [Jatropha curcas]
15 Hb_000861_080 0.1061969443 - - PREDICTED: protein ELC-like [Jatropha curcas]
16 Hb_004324_110 0.1069435213 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
17 Hb_000015_170 0.1070901698 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000291_010 0.1081074728 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
19 Hb_005725_210 0.1108629092 - - PREDICTED: RNA-binding protein 1 [Jatropha curcas]
20 Hb_000375_290 0.1114029848 - - DAG protein, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000905_210 Hb_000905_210 Hb_003682_030 Hb_003682_030 Hb_000905_210--Hb_003682_030 Hb_004870_050 Hb_004870_050 Hb_000905_210--Hb_004870_050 Hb_000260_180 Hb_000260_180 Hb_000905_210--Hb_000260_180 Hb_002263_040 Hb_002263_040 Hb_000905_210--Hb_002263_040 Hb_008695_090 Hb_008695_090 Hb_000905_210--Hb_008695_090 Hb_001766_020 Hb_001766_020 Hb_000905_210--Hb_001766_020 Hb_001225_030 Hb_001225_030 Hb_003682_030--Hb_001225_030 Hb_003682_030--Hb_008695_090 Hb_000723_110 Hb_000723_110 Hb_003682_030--Hb_000723_110 Hb_005306_160 Hb_005306_160 Hb_003682_030--Hb_005306_160 Hb_003682_030--Hb_004870_050 Hb_000094_090 Hb_000094_090 Hb_003682_030--Hb_000094_090 Hb_060094_020 Hb_060094_020 Hb_004870_050--Hb_060094_020 Hb_003927_040 Hb_003927_040 Hb_004870_050--Hb_003927_040 Hb_004870_050--Hb_000094_090 Hb_002110_160 Hb_002110_160 Hb_004870_050--Hb_002110_160 Hb_000282_090 Hb_000282_090 Hb_004870_050--Hb_000282_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090 Hb_001410_020 Hb_001410_020 Hb_000260_180--Hb_001410_020 Hb_006588_210 Hb_006588_210 Hb_000260_180--Hb_006588_210 Hb_012779_090 Hb_012779_090 Hb_000260_180--Hb_012779_090 Hb_162275_050 Hb_162275_050 Hb_000260_180--Hb_162275_050 Hb_005541_010 Hb_005541_010 Hb_000260_180--Hb_005541_010 Hb_000025_730 Hb_000025_730 Hb_000260_180--Hb_000025_730 Hb_000442_010 Hb_000442_010 Hb_002263_040--Hb_000442_010 Hb_002798_070 Hb_002798_070 Hb_002263_040--Hb_002798_070 Hb_002636_100 Hb_002636_100 Hb_002263_040--Hb_002636_100 Hb_002783_040 Hb_002783_040 Hb_002263_040--Hb_002783_040 Hb_000061_030 Hb_000061_030 Hb_002263_040--Hb_000061_030 Hb_000977_120 Hb_000977_120 Hb_002263_040--Hb_000977_120 Hb_004943_030 Hb_004943_030 Hb_008695_090--Hb_004943_030 Hb_000375_290 Hb_000375_290 Hb_008695_090--Hb_000375_290 Hb_008695_090--Hb_000723_110 Hb_001754_030 Hb_001754_030 Hb_008695_090--Hb_001754_030 Hb_000169_080 Hb_000169_080 Hb_008695_090--Hb_000169_080 Hb_001104_170 Hb_001104_170 Hb_001766_020--Hb_001104_170 Hb_001766_020--Hb_000442_010 Hb_003728_040 Hb_003728_040 Hb_001766_020--Hb_003728_040 Hb_004440_040 Hb_004440_040 Hb_001766_020--Hb_004440_040 Hb_005389_160 Hb_005389_160 Hb_001766_020--Hb_005389_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.12418 16.4656 9.23771 5.04603 6.231 5.49285
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90679 8.63658 6.41476 3.32475 5.46201

CAGE analysis