Hb_009393_220

Information

Type transcription factor
Description TF Family: Tify
Location Contig9393: 153469-157229
Sequence    

Annotation

kegg
ID rcu:RCOM_0708210
description hypothetical protein
nr
ID AIY25012.1
description JAZ11 [Hevea brasiliensis]
swissprot
ID Q9C5K8
description Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1
trembl
ID A0A0B4RUR9
description JAZ11 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63067: 153417-157129 , PASA_asmbl_63069: 155661-156301 , PASA_asmbl_63070: 153978-154348 , PASA_asmbl_63071: 154586-154903
cDNA
(Sanger)
(ID:Location)		 006_F20.ab1: 153549-153897 , 027_P21.ab1: 153830-157046

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009393_220 0.0 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
2 Hb_011930_110 0.1036746234 - - PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Jatropha curcas]
3 Hb_004440_040 0.108095772 - - ubiquitin-protein ligase, putative [Ricinus communis]
4 Hb_008103_110 0.1174300137 - - ATP binding protein, putative [Ricinus communis]
5 Hb_010012_010 0.1196031267 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000120_270 0.1243450319 - - PREDICTED: histone deacetylase 8 [Jatropha curcas]
7 Hb_003728_040 0.1247508407 - - PREDICTED: uncharacterized protein LOC101492305 [Cicer arietinum]
8 Hb_002263_040 0.1254408946 - - carbon catabolite repressor protein, putative [Ricinus communis]
9 Hb_002411_030 0.1263864479 transcription factor TF Family: NF-YC PREDICTED: dr1-associated corepressor homolog [Jatropha curcas]
10 Hb_000243_250 0.1288779271 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
11 Hb_000707_060 0.129009178 - - -
12 Hb_003055_060 0.129913341 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105649487 isoform X1 [Jatropha curcas]
13 Hb_003435_050 0.1307515486 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Jatropha curcas]
14 Hb_000796_180 0.1309108016 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
15 Hb_000803_070 0.1311862972 - - PREDICTED: protein TRAUCO [Jatropha curcas]
16 Hb_042509_030 0.1329916091 - - PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
17 Hb_142368_010 0.1332829837 - - mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]
18 Hb_005137_050 0.1370251824 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
19 Hb_001252_230 0.1386299408 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
20 Hb_003142_030 0.1404214588 - - PREDICTED: probable plastid-lipid-associated protein 14, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_009393_220 Hb_009393_220 Hb_011930_110 Hb_011930_110 Hb_009393_220--Hb_011930_110 Hb_004440_040 Hb_004440_040 Hb_009393_220--Hb_004440_040 Hb_008103_110 Hb_008103_110 Hb_009393_220--Hb_008103_110 Hb_010012_010 Hb_010012_010 Hb_009393_220--Hb_010012_010 Hb_000120_270 Hb_000120_270 Hb_009393_220--Hb_000120_270 Hb_003728_040 Hb_003728_040 Hb_009393_220--Hb_003728_040 Hb_011930_110--Hb_004440_040 Hb_002263_040 Hb_002263_040 Hb_011930_110--Hb_002263_040 Hb_001754_030 Hb_001754_030 Hb_011930_110--Hb_001754_030 Hb_001728_050 Hb_001728_050 Hb_011930_110--Hb_001728_050 Hb_000103_100 Hb_000103_100 Hb_011930_110--Hb_000103_100 Hb_000803_070 Hb_000803_070 Hb_011930_110--Hb_000803_070 Hb_000347_120 Hb_000347_120 Hb_004440_040--Hb_000347_120 Hb_004440_040--Hb_002263_040 Hb_002636_100 Hb_002636_100 Hb_004440_040--Hb_002636_100 Hb_003055_060 Hb_003055_060 Hb_004440_040--Hb_003055_060 Hb_001766_020 Hb_001766_020 Hb_004440_040--Hb_001766_020 Hb_000886_050 Hb_000886_050 Hb_008103_110--Hb_000886_050 Hb_000878_070 Hb_000878_070 Hb_008103_110--Hb_000878_070 Hb_001225_030 Hb_001225_030 Hb_008103_110--Hb_001225_030 Hb_008103_110--Hb_000803_070 Hb_006588_210 Hb_006588_210 Hb_008103_110--Hb_006588_210 Hb_005137_050 Hb_005137_050 Hb_008103_110--Hb_005137_050 Hb_005725_030 Hb_005725_030 Hb_010012_010--Hb_005725_030 Hb_010012_010--Hb_011930_110 Hb_000424_060 Hb_000424_060 Hb_010012_010--Hb_000424_060 Hb_042509_030 Hb_042509_030 Hb_010012_010--Hb_042509_030 Hb_002184_110 Hb_002184_110 Hb_010012_010--Hb_002184_110 Hb_000617_240 Hb_000617_240 Hb_000120_270--Hb_000617_240 Hb_001083_050 Hb_001083_050 Hb_000120_270--Hb_001083_050 Hb_000181_120 Hb_000181_120 Hb_000120_270--Hb_000181_120 Hb_000487_110 Hb_000487_110 Hb_000120_270--Hb_000487_110 Hb_000732_140 Hb_000732_140 Hb_000120_270--Hb_000732_140 Hb_002025_110 Hb_002025_110 Hb_000120_270--Hb_002025_110 Hb_003055_140 Hb_003055_140 Hb_003728_040--Hb_003055_140 Hb_003728_040--Hb_001766_020 Hb_000442_010 Hb_000442_010 Hb_003728_040--Hb_000442_010 Hb_003728_040--Hb_004440_040 Hb_001104_170 Hb_001104_170 Hb_003728_040--Hb_001104_170 Hb_003728_040--Hb_000347_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
180.663 274.075 175.293 34.2799 142.609 88.8371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
143.92 105.505 143.186 60.0318 123.226

CAGE analysis