Hb_000181_090

Information

Type -
Description -
Location Contig181: 68196-70027
Sequence    

Annotation

kegg
ID tcc:TCM_031606
description Yippee family zinc-binding protein, putative isoform 1
nr
ID XP_012076369.1
description PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
swissprot
ID Q9FN32
description Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1
trembl
ID A0A067LBU7
description Protein yippee-like OS=Jatropha curcas GN=JCGZ_15311 PE=3 SV=1
Gene Ontology
ID GO:0005634
description protein yippee-like at5g53940

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_090 0.0 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
2 Hb_007885_060 0.0789506862 - - replication factor C 40 kDa family protein [Populus trichocarpa]
3 Hb_000424_060 0.0923402 - - PREDICTED: myosin-15 [Jatropha curcas]
4 Hb_007533_010 0.0953377573 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
5 Hb_000105_050 0.1015135791 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
6 Hb_002284_150 0.1093487079 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
7 Hb_000053_110 0.1106093705 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000300_670 0.111270842 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
9 Hb_001951_200 0.1129380269 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
10 Hb_000789_320 0.1130167152 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
11 Hb_012340_090 0.1131415185 - - PREDICTED: endonuclease III homolog 1, chloroplastic isoform X1 [Populus euphratica]
12 Hb_012395_230 0.113961698 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
13 Hb_002893_040 0.1142425094 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
14 Hb_003638_130 0.1142708137 - - PREDICTED: uncharacterized protein LOC105645779 [Jatropha curcas]
15 Hb_000010_110 0.1147795695 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
16 Hb_002299_030 0.1163284072 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003848_040 0.1177713432 - - PREDICTED: phosphatidylinositol-glycan biosynthesis class X protein isoform X1 [Jatropha curcas]
18 Hb_001776_210 0.1196514545 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_001623_270 0.1215658866 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
20 Hb_001517_050 0.1231593893 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000181_090 Hb_000181_090 Hb_007885_060 Hb_007885_060 Hb_000181_090--Hb_007885_060 Hb_000424_060 Hb_000424_060 Hb_000181_090--Hb_000424_060 Hb_007533_010 Hb_007533_010 Hb_000181_090--Hb_007533_010 Hb_000105_050 Hb_000105_050 Hb_000181_090--Hb_000105_050 Hb_002284_150 Hb_002284_150 Hb_000181_090--Hb_002284_150 Hb_000053_110 Hb_000053_110 Hb_000181_090--Hb_000053_110 Hb_002820_050 Hb_002820_050 Hb_007885_060--Hb_002820_050 Hb_002311_180 Hb_002311_180 Hb_007885_060--Hb_002311_180 Hb_004453_130 Hb_004453_130 Hb_007885_060--Hb_004453_130 Hb_002299_030 Hb_002299_030 Hb_007885_060--Hb_002299_030 Hb_007885_060--Hb_007533_010 Hb_002820_030 Hb_002820_030 Hb_000424_060--Hb_002820_030 Hb_003142_030 Hb_003142_030 Hb_000424_060--Hb_003142_030 Hb_001951_200 Hb_001951_200 Hb_000424_060--Hb_001951_200 Hb_000424_060--Hb_007533_010 Hb_000010_110 Hb_000010_110 Hb_000424_060--Hb_000010_110 Hb_000025_780 Hb_000025_780 Hb_007533_010--Hb_000025_780 Hb_002338_020 Hb_002338_020 Hb_007533_010--Hb_002338_020 Hb_000227_170 Hb_000227_170 Hb_007533_010--Hb_000227_170 Hb_002542_040 Hb_002542_040 Hb_007533_010--Hb_002542_040 Hb_001328_030 Hb_001328_030 Hb_000105_050--Hb_001328_030 Hb_004440_020 Hb_004440_020 Hb_000105_050--Hb_004440_020 Hb_000105_050--Hb_002284_150 Hb_003077_020 Hb_003077_020 Hb_000105_050--Hb_003077_020 Hb_000422_030 Hb_000422_030 Hb_000105_050--Hb_000422_030 Hb_001517_050 Hb_001517_050 Hb_002284_150--Hb_001517_050 Hb_012340_090 Hb_012340_090 Hb_002284_150--Hb_012340_090 Hb_003213_010 Hb_003213_010 Hb_002284_150--Hb_003213_010 Hb_000300_260 Hb_000300_260 Hb_002284_150--Hb_000300_260 Hb_000649_230 Hb_000649_230 Hb_002284_150--Hb_000649_230 Hb_002946_190 Hb_002946_190 Hb_002284_150--Hb_002946_190 Hb_000866_010 Hb_000866_010 Hb_000053_110--Hb_000866_010 Hb_004970_190 Hb_004970_190 Hb_000053_110--Hb_004970_190 Hb_012395_230 Hb_012395_230 Hb_000053_110--Hb_012395_230 Hb_005271_220 Hb_005271_220 Hb_000053_110--Hb_005271_220 Hb_000261_020 Hb_000261_020 Hb_000053_110--Hb_000261_020 Hb_010222_020 Hb_010222_020 Hb_000053_110--Hb_010222_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.3998 34.7089 65.3117 30.6343 21.4305 35.7885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.4435 38.9908 15.0061 16.13 38.6138

CAGE analysis