Hb_001951_200

Information

Type -
Description -
Location Contig1951: 176256-178311
Sequence    

Annotation

kegg
ID cit:102606811
description cold-regulated 413 inner membrane protein 2, chloroplastic-like
nr
ID XP_012091898.1
description PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q94AL8
description Cold-regulated 413 inner membrane protein 1, chloroplastic OS=Arabidopsis thaliana GN=COR413IM1 PE=1 SV=1
trembl
ID A0A067JBQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21673 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19503: 176337-178310
cDNA
(Sanger)
(ID:Location)		 006_J14.ab1: 176560-178310 , 021_J02.ab1: 176546-178310 , 048_G07.ab1: 176560-178310

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_200 0.0 - - PREDICTED: cold-regulated 413 inner membrane protein 1, chloroplastic-like [Jatropha curcas]
2 Hb_002893_040 0.0874883726 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
3 Hb_027905_020 0.0875257842 - - PREDICTED: uncharacterized protein LOC105642268 [Jatropha curcas]
4 Hb_000227_270 0.0908686943 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
5 Hb_002413_010 0.0921465717 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_000173_310 0.0926082956 - - PREDICTED: uncharacterized protein LOC105631893 isoform X1 [Jatropha curcas]
7 Hb_000424_060 0.0929991292 - - PREDICTED: myosin-15 [Jatropha curcas]
8 Hb_001258_100 0.0941566718 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
9 Hb_000130_420 0.0964012534 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
10 Hb_000238_040 0.1030281342 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
11 Hb_007290_030 0.1044705394 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
12 Hb_000645_170 0.1045564052 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000640_160 0.1078801945 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
14 Hb_077026_010 0.109032535 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
15 Hb_001153_210 0.1115351945 - - PREDICTED: uncharacterized protein LOC105645887 isoform X1 [Jatropha curcas]
16 Hb_000760_020 0.1115856566 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
17 Hb_032202_080 0.1117545794 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
18 Hb_001500_060 0.1120546873 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
19 Hb_002965_040 0.1125019242 - - drought-responsive family protein [Populus trichocarpa]
20 Hb_000181_090 0.1129380269 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]

Gene co-expression network

sample Hb_001951_200 Hb_001951_200 Hb_002893_040 Hb_002893_040 Hb_001951_200--Hb_002893_040 Hb_027905_020 Hb_027905_020 Hb_001951_200--Hb_027905_020 Hb_000227_270 Hb_000227_270 Hb_001951_200--Hb_000227_270 Hb_002413_010 Hb_002413_010 Hb_001951_200--Hb_002413_010 Hb_000173_310 Hb_000173_310 Hb_001951_200--Hb_000173_310 Hb_000424_060 Hb_000424_060 Hb_001951_200--Hb_000424_060 Hb_001258_100 Hb_001258_100 Hb_002893_040--Hb_001258_100 Hb_002893_040--Hb_002413_010 Hb_001776_210 Hb_001776_210 Hb_002893_040--Hb_001776_210 Hb_002092_120 Hb_002092_120 Hb_002893_040--Hb_002092_120 Hb_002572_020 Hb_002572_020 Hb_002893_040--Hb_002572_020 Hb_027905_020--Hb_002413_010 Hb_017214_040 Hb_017214_040 Hb_027905_020--Hb_017214_040 Hb_004096_240 Hb_004096_240 Hb_027905_020--Hb_004096_240 Hb_008387_010 Hb_008387_010 Hb_027905_020--Hb_008387_010 Hb_000120_210 Hb_000120_210 Hb_027905_020--Hb_000120_210 Hb_007290_030 Hb_007290_030 Hb_000227_270--Hb_007290_030 Hb_000352_350 Hb_000352_350 Hb_000227_270--Hb_000352_350 Hb_000227_270--Hb_017214_040 Hb_023226_070 Hb_023226_070 Hb_000227_270--Hb_023226_070 Hb_004943_030 Hb_004943_030 Hb_000227_270--Hb_004943_030 Hb_000086_500 Hb_000086_500 Hb_000227_270--Hb_000086_500 Hb_183433_010 Hb_183433_010 Hb_002413_010--Hb_183433_010 Hb_002413_010--Hb_002572_020 Hb_007248_030 Hb_007248_030 Hb_002413_010--Hb_007248_030 Hb_000282_090 Hb_000282_090 Hb_002413_010--Hb_000282_090 Hb_003912_040 Hb_003912_040 Hb_002413_010--Hb_003912_040 Hb_003213_010 Hb_003213_010 Hb_000173_310--Hb_003213_010 Hb_001723_150 Hb_001723_150 Hb_000173_310--Hb_001723_150 Hb_000300_260 Hb_000300_260 Hb_000173_310--Hb_000300_260 Hb_004312_010 Hb_004312_010 Hb_000173_310--Hb_004312_010 Hb_000173_310--Hb_002572_020 Hb_000173_310--Hb_002413_010 Hb_002820_030 Hb_002820_030 Hb_000424_060--Hb_002820_030 Hb_003142_030 Hb_003142_030 Hb_000424_060--Hb_003142_030 Hb_000181_090 Hb_000181_090 Hb_000424_060--Hb_000181_090 Hb_007533_010 Hb_007533_010 Hb_000424_060--Hb_007533_010 Hb_000010_110 Hb_000010_110 Hb_000424_060--Hb_000010_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.1079 35.9405 48.6211 26.251 25.8555 21.7614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.6374 17.6965 13.2641 12.0018 26.2775

CAGE analysis