Hb_001776_210

Information

Type -
Description -
Location Contig1776: 159479-167326
Sequence    

Annotation

kegg
ID rcu:RCOM_1394800
description CBL-interacting serine/threonine-protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002532581.1
description CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
swissprot
ID Q2V452
description CBL-interacting serine/threonine-protein kinase 3 OS=Arabidopsis thaliana GN=CIPK3 PE=1 SV=2
trembl
ID B9T2W2
description Non-specific serine/threonine protein kinase OS=Ricinus communis GN=RCOM_1394800 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cbl-interacting serine threonine-protein kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17089: 164357-165067 , PASA_asmbl_17090: 159451-167294 , PASA_asmbl_17091: 160390-160834
cDNA
(Sanger)
(ID:Location)		 051_O23.ab1: 159451-162723

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001776_210 0.0 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
2 Hb_000003_680 0.0837748118 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
3 Hb_087313_010 0.0875501275 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000352_350 0.0898306858 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
5 Hb_002893_040 0.0913073041 - - PREDICTED: carbon catabolite repressor protein 4 homolog 6 isoform X1 [Jatropha curcas]
6 Hb_001500_120 0.0920312152 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_003506_030 0.0935295282 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
8 Hb_000282_090 0.0965001986 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
9 Hb_000227_270 0.0966120536 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1 [Jatropha curcas]
10 Hb_000089_210 0.0973800697 - - unknown [Medicago truncatula]
11 Hb_000048_080 0.0982080704 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
12 Hb_003470_040 0.0983119986 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta 1, mitochondrial [Jatropha curcas]
13 Hb_000176_020 0.0985198215 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
14 Hb_002203_030 0.0990411658 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]
15 Hb_001623_270 0.1004070755 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
16 Hb_000723_030 0.1013629534 transcription factor TF Family: E2F-DP PREDICTED: transcription factor-like protein DPB isoform X1 [Jatropha curcas]
17 Hb_002413_010 0.1023788423 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_005977_030 0.1030627597 - - PREDICTED: monothiol glutaredoxin-S10-like [Jatropha curcas]
19 Hb_000789_320 0.1043711673 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
20 Hb_002092_120 0.1045749391 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001776_210 Hb_001776_210 Hb_000003_680 Hb_000003_680 Hb_001776_210--Hb_000003_680 Hb_087313_010 Hb_087313_010 Hb_001776_210--Hb_087313_010 Hb_000352_350 Hb_000352_350 Hb_001776_210--Hb_000352_350 Hb_002893_040 Hb_002893_040 Hb_001776_210--Hb_002893_040 Hb_001500_120 Hb_001500_120 Hb_001776_210--Hb_001500_120 Hb_003506_030 Hb_003506_030 Hb_001776_210--Hb_003506_030 Hb_012286_020 Hb_012286_020 Hb_000003_680--Hb_012286_020 Hb_000787_080 Hb_000787_080 Hb_000003_680--Hb_000787_080 Hb_000003_680--Hb_087313_010 Hb_021576_150 Hb_021576_150 Hb_000003_680--Hb_021576_150 Hb_002218_020 Hb_002218_020 Hb_000003_680--Hb_002218_020 Hb_102948_010 Hb_102948_010 Hb_000003_680--Hb_102948_010 Hb_012438_030 Hb_012438_030 Hb_087313_010--Hb_012438_030 Hb_087313_010--Hb_002218_020 Hb_001703_040 Hb_001703_040 Hb_087313_010--Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_087313_010--Hb_000788_030 Hb_087313_010--Hb_102948_010 Hb_004324_360 Hb_004324_360 Hb_087313_010--Hb_004324_360 Hb_007290_030 Hb_007290_030 Hb_000352_350--Hb_007290_030 Hb_000239_060 Hb_000239_060 Hb_000352_350--Hb_000239_060 Hb_000227_270 Hb_000227_270 Hb_000352_350--Hb_000227_270 Hb_001005_020 Hb_001005_020 Hb_000352_350--Hb_001005_020 Hb_000144_070 Hb_000144_070 Hb_000352_350--Hb_000144_070 Hb_000089_210 Hb_000089_210 Hb_000352_350--Hb_000089_210 Hb_001258_100 Hb_001258_100 Hb_002893_040--Hb_001258_100 Hb_002413_010 Hb_002413_010 Hb_002893_040--Hb_002413_010 Hb_001951_200 Hb_001951_200 Hb_002893_040--Hb_001951_200 Hb_002092_120 Hb_002092_120 Hb_002893_040--Hb_002092_120 Hb_002572_020 Hb_002572_020 Hb_002893_040--Hb_002572_020 Hb_005977_030 Hb_005977_030 Hb_001500_120--Hb_005977_030 Hb_000723_030 Hb_000723_030 Hb_001500_120--Hb_000723_030 Hb_004712_190 Hb_004712_190 Hb_001500_120--Hb_004712_190 Hb_002311_480 Hb_002311_480 Hb_001500_120--Hb_002311_480 Hb_011671_310 Hb_011671_310 Hb_001500_120--Hb_011671_310 Hb_003470_040 Hb_003470_040 Hb_001500_120--Hb_003470_040 Hb_016448_010 Hb_016448_010 Hb_003506_030--Hb_016448_010 Hb_003506_030--Hb_000089_210 Hb_029695_080 Hb_029695_080 Hb_003506_030--Hb_029695_080 Hb_003506_030--Hb_087313_010 Hb_004531_150 Hb_004531_150 Hb_003506_030--Hb_004531_150 Hb_000958_080 Hb_000958_080 Hb_003506_030--Hb_000958_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6881 34.8361 55.5644 30.4795 13.5629 16.522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.6714 23.5533 12.2384 17.2814 30.0177

CAGE analysis