Hb_000239_060

Information

Type -
Description -
Location Contig239: 152098-155947
Sequence    

Annotation

kegg
ID rcu:RCOM_1587580
description hypothetical protein
nr
ID XP_002510104.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5S1U6
description Interferon-related developmental regulator 1 OS=Sus scrofa GN=IFRD1 PE=2 SV=1
trembl
ID B9R711
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587580 PE=4 SV=1
Gene Ontology
ID GO:0005634
description interferon-related developmental regulator 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25030: 152764-154299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000239_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007441_020 0.0695997778 - - Rab6 [Hevea brasiliensis]
3 Hb_000352_350 0.0713687446 - - PREDICTED: monothiol glutaredoxin-S7, chloroplastic [Jatropha curcas]
4 Hb_001751_140 0.0735758493 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
5 Hb_001776_060 0.0747393875 - - PREDICTED: methyl-CpG-binding domain-containing protein 5-like [Jatropha curcas]
6 Hb_007290_030 0.0747628253 transcription factor TF Family: bZIP PREDICTED: uncharacterized protein LOC105629473 [Jatropha curcas]
7 Hb_006588_070 0.0750923215 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
8 Hb_008568_020 0.0756052516 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
9 Hb_001635_040 0.0782829906 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
10 Hb_000339_040 0.0795817619 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
11 Hb_000879_180 0.0802580276 - - XPA-binding protein, putative [Ricinus communis]
12 Hb_000789_320 0.0804752497 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
13 Hb_000260_680 0.080647657 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
14 Hb_032202_080 0.0809715164 - - PREDICTED: peroxisome biogenesis protein 16-like isoform X1 [Jatropha curcas]
15 Hb_003760_030 0.0836559448 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
16 Hb_007062_040 0.0840416762 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
17 Hb_004586_060 0.0841543777 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
18 Hb_002615_120 0.0843489613 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]
19 Hb_004096_180 0.0849475897 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
20 Hb_000776_100 0.0854178607 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_000239_060 Hb_000239_060 Hb_007441_020 Hb_007441_020 Hb_000239_060--Hb_007441_020 Hb_000352_350 Hb_000352_350 Hb_000239_060--Hb_000352_350 Hb_001751_140 Hb_001751_140 Hb_000239_060--Hb_001751_140 Hb_001776_060 Hb_001776_060 Hb_000239_060--Hb_001776_060 Hb_007290_030 Hb_007290_030 Hb_000239_060--Hb_007290_030 Hb_006588_070 Hb_006588_070 Hb_000239_060--Hb_006588_070 Hb_106552_020 Hb_106552_020 Hb_007441_020--Hb_106552_020 Hb_000866_310 Hb_000866_310 Hb_007441_020--Hb_000866_310 Hb_000035_110 Hb_000035_110 Hb_007441_020--Hb_000035_110 Hb_008568_020 Hb_008568_020 Hb_007441_020--Hb_008568_020 Hb_000005_220 Hb_000005_220 Hb_007441_020--Hb_000005_220 Hb_000352_350--Hb_007290_030 Hb_000227_270 Hb_000227_270 Hb_000352_350--Hb_000227_270 Hb_001005_020 Hb_001005_020 Hb_000352_350--Hb_001005_020 Hb_000144_070 Hb_000144_070 Hb_000352_350--Hb_000144_070 Hb_000089_210 Hb_000089_210 Hb_000352_350--Hb_000089_210 Hb_001635_040 Hb_001635_040 Hb_001751_140--Hb_001635_040 Hb_003927_040 Hb_003927_040 Hb_001751_140--Hb_003927_040 Hb_001751_140--Hb_008568_020 Hb_000076_160 Hb_000076_160 Hb_001751_140--Hb_000076_160 Hb_001728_050 Hb_001728_050 Hb_001751_140--Hb_001728_050 Hb_000803_070 Hb_000803_070 Hb_001751_140--Hb_000803_070 Hb_012384_030 Hb_012384_030 Hb_001776_060--Hb_012384_030 Hb_000260_680 Hb_000260_680 Hb_001776_060--Hb_000260_680 Hb_001776_060--Hb_000144_070 Hb_032202_080 Hb_032202_080 Hb_001776_060--Hb_032202_080 Hb_002217_110 Hb_002217_110 Hb_001776_060--Hb_002217_110 Hb_001776_060--Hb_007290_030 Hb_001761_120 Hb_001761_120 Hb_007290_030--Hb_001761_120 Hb_007290_030--Hb_000227_270 Hb_007290_030--Hb_001635_040 Hb_002872_030 Hb_002872_030 Hb_006588_070--Hb_002872_030 Hb_000776_100 Hb_000776_100 Hb_006588_070--Hb_000776_100 Hb_027428_010 Hb_027428_010 Hb_006588_070--Hb_027428_010 Hb_022132_050 Hb_022132_050 Hb_006588_070--Hb_022132_050 Hb_001051_080 Hb_001051_080 Hb_006588_070--Hb_001051_080 Hb_000096_120 Hb_000096_120 Hb_006588_070--Hb_000096_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.2667 14.7124 23.405 16.6332 11.0343 16.2727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.99487 12.8481 8.70769 9.19872 11.5164

CAGE analysis